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  • CD63
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:412.2 nTPM
HPA Brain:163.8 nTPM
GTEx:412.2 nTPM
FANTOM5:152.0 Scaled Tags Per Million
Pig:67.0 nTPM
Mouse:95.9 nTPM
Allen mouse:0.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

163.8
Sample id Sample description nTPM
Amygdala
nTPM: 163.8
2695 Female, age 67, right hemisphere 199.4
1987 Female, age 91, left hemisphere 182.4
2814 Male, age 76, right hemisphere 156.9
2514 Male, age 75, right hemisphere 156.5
2517 Female, age 94, left hemisphere 123.9
Basal amygdala
nTPM: 127.9
2609 Male, age 75, right hemisphere 157.1
2110 Male, age 80, left hemisphere 141.8
1955 Male, age 76, both hemispheres 126.3
2685 Female, age 94, left hemisphere 125.9
2243 Female, age 91, right hemisphere 119.7
2827 Female, age 67, right hemisphere 96.5
Central amygdala
nTPM: 140.2
2515 Male, age 75, right hemisphere 159.0
2826 Female, age 94, left hemisphere 155.1
1905 Male, age 76, both hemispheres 137.5
2701 Female, age 91, right hemisphere 127.0
2239 Male, age 80, left hemisphere 122.4
Corticomedial amygdala
nTPM: 128.0
2428 Male, age 75, right hemisphere 152.1
2829 Male, age 80, left hemisphere 151.8
2429 Female, age 94, left hemisphere 130.3
2242 Female, age 91, right hemisphere 127.3
2240 Male, age 76, both hemispheres 126.3
2535 Female, age 67, right hemisphere 79.9
Lateral amygdala
nTPM: 123.2
2516 Male, age 75, right hemisphere 144.9
1883 Male, age 76, both hemispheres 136.9
2256 Male, age 80, left hemisphere 124.2
2534 Female, age 94, left hemisphere 118.2
2830 Female, age 67, right hemisphere 114.5
2255 Female, age 91, right hemisphere 100.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

412.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 412.2
Samples: 181

Max nTPM: 825.7
Min nTPM: 207.3
Std nTPM: 101.2
Median nTPM: 397.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 825.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 721.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 704.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 688.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 666.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 634.8
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 632.5
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 622.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 604.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 599.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 598.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 595.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 590.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 585.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 575.5
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 575.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 568.0
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 554.0
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 550.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 539.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 535.9
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 535.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 532.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 515.9
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 511.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 507.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 505.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 500.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 500.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 499.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 491.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 486.3
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 479.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 479.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 478.0
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 477.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 472.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 472.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 467.5
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 467.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 467.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 465.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 464.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 460.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 458.4
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 458.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 457.0
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 456.4
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 456.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 456.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 453.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 449.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 445.2
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 445.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 440.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 438.9
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 437.7
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 437.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 436.9
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 436.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 434.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 434.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 433.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 431.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 429.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 426.8
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 426.7
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 426.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 426.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 424.7
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 424.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 422.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 422.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 420.9
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 420.2
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 419.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 417.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 417.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 416.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 415.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 414.2
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 412.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 411.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 411.6
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 410.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 410.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 409.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 406.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 404.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 399.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 397.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 396.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 396.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 393.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 392.3
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 391.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 390.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 387.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 385.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 385.3
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 384.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 384.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 382.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 381.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 381.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 381.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 377.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 375.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 374.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 374.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 373.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 370.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 370.4
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 368.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 367.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 367.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 366.3
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 365.3
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 364.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 364.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 364.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 364.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 362.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 362.0
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 361.8
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 360.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 360.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 360.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 357.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 353.5
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 353.4
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 352.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 352.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 351.5
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 348.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 346.9
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 346.9
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 346.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 345.2
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 345.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 344.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 342.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 342.1
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 338.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 337.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 333.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 333.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 333.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 330.4
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 325.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 325.2
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 324.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 320.0
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 313.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 313.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 311.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 309.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 309.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 307.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 302.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 299.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 297.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 296.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 295.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 293.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 292.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 290.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 289.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 287.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 285.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 285.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 274.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 271.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 269.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 269.2
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 261.4
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 232.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 230.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 228.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 213.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 207.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

152.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 152.0
FF:10151-102I7 76 years, female 152.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

67.0
Pig sample Sample description nTPM
Amygdala
nTPM: 67.0
Samples: 4

Max nTPM: 77.4
Min nTPM: 49.7
Sample A Female 73.9
Sample B Female 77.4
Sample C Male 67.1
Sample D Male 49.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

95.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 95.9
Samples: 4

Max nTPM: 102.9
Min nTPM: 88.9
Sample A Male 93.9
Sample B Male 88.9
Sample C Female 97.8
Sample D Female 102.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.8
69540611 Antisense, RP_050426_02_B02, Mouse strain C57BL/6J (56 days, male) 1.0
73992715 Antisense, RP_051214_01_E07, Mouse strain C57BL/6J (56 days, male) 0.5

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