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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
39.2
Sample id
Sample description
nTPM
Amygdala nTPM: 31.1
2814
Male, age 76, right hemisphere
34.0
2517
Female, age 94, left hemisphere
32.1
2695
Female, age 67, right hemisphere
31.6
2514
Male, age 75, right hemisphere
30.5
1987
Female, age 91, left hemisphere
27.5
Basal amygdala nTPM: 31.2
2827
Female, age 67, right hemisphere
45.7
2685
Female, age 94, left hemisphere
32.8
1955
Male, age 76, both hemispheres
28.5
2110
Male, age 80, left hemisphere
28.1
2243
Female, age 91, right hemisphere
27.0
2609
Male, age 75, right hemisphere
24.8
Central amygdala nTPM: 34.1
2826
Female, age 94, left hemisphere
58.6
2515
Male, age 75, right hemisphere
30.7
2239
Male, age 80, left hemisphere
27.5
1905
Male, age 76, both hemispheres
27.2
2701
Female, age 91, right hemisphere
26.4
Corticomedial amygdala nTPM: 25.7
2535
Female, age 67, right hemisphere
33.0
2428
Male, age 75, right hemisphere
26.9
2429
Female, age 94, left hemisphere
25.3
2240
Male, age 76, both hemispheres
23.5
2829
Male, age 80, left hemisphere
23.5
2242
Female, age 91, right hemisphere
21.8
Lateral amygdala nTPM: 39.2
2830
Female, age 67, right hemisphere
55.3
2534
Female, age 94, left hemisphere
47.3
2516
Male, age 75, right hemisphere
37.0
1883
Male, age 76, both hemispheres
35.1
2256
Male, age 80, left hemisphere
32.0
2255
Female, age 91, right hemisphere
28.3
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
28.6
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 28.6
Samples: 181
Max nTPM: 54.8
Min nTPM: 10.9
Std nTPM: 9.5
Median nTPM: 26.6
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
54.8
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
54.8
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
54.0
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
51.8
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
50.5
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
49.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
49.5
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
49.3
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
48.8
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
48.2
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
47.6
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
47.3
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
45.2
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
43.0
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
42.9
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
42.2
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
42.1
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
41.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
41.3
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
41.2
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
40.8
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
40.6
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
40.4
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
40.3
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
39.7
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
39.6
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
39.4
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
39.3
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
39.1
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
39.0
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
38.9
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
38.9
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
38.5
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
38.4
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
38.4
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
38.2
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
37.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
36.6
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
36.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
36.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
35.7
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
35.1
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
34.9
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
34.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
34.4
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
34.0
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
33.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
33.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
33.3
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
33.3
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
33.1
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
32.6
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
32.3
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
32.2
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
32.2
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
32.1
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
32.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
31.7
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
31.5
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
31.4
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
31.3
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
30.8
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
30.4
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
30.4
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
30.2
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
30.2
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
30.2
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
30.2
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
30.2
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
30.0
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
30.0
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
29.8
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
29.7
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
29.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
28.9
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
28.8
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
28.8
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
28.6
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
28.5
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
28.4
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
28.3
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
28.1
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
28.0
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
27.9
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
27.9
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
27.3
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
27.3
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
27.0
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
26.8
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
26.6
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
26.6
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
26.5
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
26.4
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
26.2
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
26.0
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
26.0
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
25.9
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
25.6
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
25.6
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
25.5
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
25.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
25.4
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
25.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
25.2
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
24.7
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
24.7
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
24.7
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
24.5
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
24.5
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
24.3
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
24.2
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
24.2
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
24.1
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
24.0
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
23.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
23.9
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
23.9
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
23.8
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
23.7
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
23.6
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
23.6
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
23.6
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
23.5
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
23.5
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
23.5
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
23.3
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
23.3
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
23.1
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
23.0
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
22.9
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
22.8
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
22.7
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
22.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
22.4
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
22.3
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
22.0
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
22.0
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
21.8
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
21.8
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
21.7
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
21.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
21.6
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
21.5
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
21.5
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
20.7
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
20.3
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
20.0
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
20.0
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
19.8
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
19.8
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
19.5
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
19.4
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
19.1
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
19.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
18.9
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
18.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
18.8
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
18.7
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
18.4
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
18.3
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
18.2
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
18.0
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
18.0
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
17.9
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
17.8
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
17.5
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
17.5
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
17.4
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
17.2
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
16.6
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
16.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
15.7
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
15.6
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
15.2
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
15.1
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
13.9
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
13.8
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
12.4
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
11.4
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
11.0
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
10.9
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
8.9
Pig sample
Sample description
nTPM
Amygdala nTPM: 8.9
Samples: 4
Max nTPM: 13.9
Min nTPM: 5.7
Sample A
Female
13.9
Sample B
Female
5.7
Sample C
Male
6.7
Sample D
Male
9.3
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
66.1
Mouse sample
Sample description
nTPM
Amygdala nTPM: 66.2
Samples: 4
Max nTPM: 82.6
Min nTPM: 55.5
Sample A
Male
60.3
Sample B
Male
66.2
Sample C
Female
82.6
Sample D
Female
55.5
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
