A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
10.3
nTPM
Monaco:
24.8
nTPM
Schmiedel:
18.3
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.3
HPA sample
nTPM
Memory B-cell nTPM: 10.3
Samples: 6
Max nTPM: 13.4
Min nTPM: 3.4
P10809_1017
3.4
P10809_1025
12.1
P10809_1044
13.4
P10809_1063
10.6
P10809_1092
9.7
P10809_1105
12.6
Naive B-cell nTPM: 7.9
Samples: 6
Max nTPM: 11.7
Min nTPM: 4.3
P10809_1011
4.3
P10809_1029
9.8
P10809_1048
11.7
P10809_1067
4.9
P10809_1091
8.8
P10809_1104
8.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 19.1
Samples: 4
Max nTPM: 23.5
Min nTPM: 15.4
RHH5310_R3677
20.6
RHH5218_R3590
16.9
RHH5247_R3619
23.5
RHH5276_R3648
15.4
Naive B-cell nTPM: 24.8
Samples: 4
Max nTPM: 34.7
Min nTPM: 17.2
RHH5308_R3675
24.7
RHH5216_R3588
22.5
RHH5245_R3617
34.7
RHH5274_R3646
17.2
Non-switched memory B-cell nTPM: 24.7
Samples: 4
Max nTPM: 40.0
Min nTPM: 11.2
RHH5309_R3676
25.4
RHH5217_R3589
11.2
RHH5246_R3618
40.0
RHH5275_R3647
22.3
Plasmablast nTPM: 8.5
Samples: 4
Max nTPM: 12.1
Min nTPM: 2.3
RHH5312_R3679
11.7
RHH5220_R3592
7.8
RHH5249_R3621
2.3
RHH5278_R3650
12.1
Switched memory B-cell nTPM: 20.2
Samples: 4
Max nTPM: 26.2
Min nTPM: 15.9
RHH5311_R3678
26.2
RHH5219_R3591
20.2
RHH5248_R3620
18.6
RHH5277_R3649
15.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.3
Schmiedel sample id
TPM
Naive B-cell TPM: 18.3
Samples: 91
Max TPM: 31.5
Min TPM: 11.3
B_CELL_NAIVE_1
31.5
B_CELL_NAIVE_2
26.6
B_CELL_NAIVE_3
25.7
B_CELL_NAIVE_4
25.1
B_CELL_NAIVE_5
24.9
B_CELL_NAIVE_6
23.6
B_CELL_NAIVE_7
23.4
B_CELL_NAIVE_8
23.2
B_CELL_NAIVE_9
23.0
B_CELL_NAIVE_10
22.8
B_CELL_NAIVE_11
22.7
B_CELL_NAIVE_12
22.6
B_CELL_NAIVE_13
22.3
B_CELL_NAIVE_14
22.1
B_CELL_NAIVE_15
21.7
B_CELL_NAIVE_16
21.4
B_CELL_NAIVE_17
21.3
B_CELL_NAIVE_18
21.3
B_CELL_NAIVE_19
20.9
B_CELL_NAIVE_20
20.9
B_CELL_NAIVE_21
20.8
B_CELL_NAIVE_22
20.8
B_CELL_NAIVE_23
20.6
B_CELL_NAIVE_24
20.4
B_CELL_NAIVE_25
20.4
B_CELL_NAIVE_26
20.4
B_CELL_NAIVE_27
20.2
B_CELL_NAIVE_28
20.1
B_CELL_NAIVE_29
20.0
B_CELL_NAIVE_30
19.9
B_CELL_NAIVE_31
19.7
B_CELL_NAIVE_32
19.7
B_CELL_NAIVE_33
19.1
B_CELL_NAIVE_34
19.1
B_CELL_NAIVE_35
19.0
B_CELL_NAIVE_36
18.9
B_CELL_NAIVE_37
18.9
B_CELL_NAIVE_38
18.8
B_CELL_NAIVE_39
18.7
B_CELL_NAIVE_40
18.6
B_CELL_NAIVE_41
18.3
B_CELL_NAIVE_42
18.1
B_CELL_NAIVE_43
17.9
B_CELL_NAIVE_44
17.8
B_CELL_NAIVE_45
17.8
B_CELL_NAIVE_46
17.7
B_CELL_NAIVE_47
17.6
B_CELL_NAIVE_48
17.5
B_CELL_NAIVE_49
17.3
B_CELL_NAIVE_50
17.3
B_CELL_NAIVE_51
17.3
B_CELL_NAIVE_52
17.2
B_CELL_NAIVE_53
17.2
B_CELL_NAIVE_54
17.1
B_CELL_NAIVE_55
17.0
B_CELL_NAIVE_56
17.0
B_CELL_NAIVE_57
16.9
B_CELL_NAIVE_58
16.8
B_CELL_NAIVE_59
16.8
B_CELL_NAIVE_60
16.7
B_CELL_NAIVE_61
16.7
B_CELL_NAIVE_62
16.6
B_CELL_NAIVE_63
16.5
B_CELL_NAIVE_64
16.4
B_CELL_NAIVE_65
16.4
B_CELL_NAIVE_66
16.4
B_CELL_NAIVE_67
16.2
B_CELL_NAIVE_68
16.1
B_CELL_NAIVE_69
15.8
B_CELL_NAIVE_70
15.8
B_CELL_NAIVE_71
15.6
B_CELL_NAIVE_72
15.5
B_CELL_NAIVE_73
15.2
B_CELL_NAIVE_74
15.0
B_CELL_NAIVE_75
14.9
B_CELL_NAIVE_76
14.9
B_CELL_NAIVE_77
14.7
B_CELL_NAIVE_78
14.7
B_CELL_NAIVE_79
14.6
B_CELL_NAIVE_80
14.6
B_CELL_NAIVE_81
14.6
B_CELL_NAIVE_82
14.4
B_CELL_NAIVE_83
13.7
B_CELL_NAIVE_84
13.2
B_CELL_NAIVE_85
12.9
B_CELL_NAIVE_86
12.7
B_CELL_NAIVE_87
12.7
B_CELL_NAIVE_88
12.6
B_CELL_NAIVE_89
12.0
B_CELL_NAIVE_90
11.7
B_CELL_NAIVE_91
11.3
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