A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
30.4
nTPM
Monaco:
52.3
nTPM
Schmiedel:
22.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
30.4
HPA sample
nTPM
Classical monocyte nTPM: 14.8
Samples: 6
Max nTPM: 20.6
Min nTPM: 12.0
P10809_1003
12.0
P10809_1020
16.3
P10809_1039
20.6
P10809_1058
12.6
P10809_1080
14.5
P10809_1107
12.8
Intermediate monocyte nTPM: 15.8
Samples: 6
Max nTPM: 20.6
Min nTPM: 10.9
P10809_1004
20.6
P10809_1023
17.6
P10809_1042
20.0
P10809_1061
10.9
P10809_1081
13.9
P10809_1108
11.8
Non-classical monocyte nTPM: 30.4
Samples: 5
Max nTPM: 48.4
Min nTPM: 21.0
P10809_1005
24.7
P10809_1053
33.0
P10809_1072
48.4
P10809_1082
21.0
P10809_1109
25.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
52.3
Monaco sample
nTPM
Classical monocyte nTPM: 35.3
Samples: 4
Max nTPM: 42.0
Min nTPM: 27.2
RHH5313_R3680
40.6
RHH5221_R3593
42.0
RHH5250_R3622
31.5
RHH5279_R3651
27.2
Intermediate monocyte nTPM: 41.5
Samples: 4
Max nTPM: 60.4
Min nTPM: 34.2
RHH5314_R3681
34.2
RHH5222_R3594
60.4
RHH5251_R3623
34.9
RHH5280_R3652
36.4
Non-classical monocyte nTPM: 52.3
Samples: 4
Max nTPM: 66.8
Min nTPM: 46.9
RHH5315_R3682
47.9
RHH5223_R3595
66.8
RHH5252_R3624
46.9
RHH5281_R3653
47.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.5
Schmiedel sample id
TPM
Classical monocyte TPM: 9.3
Samples: 91
Max TPM: 17.0
Min TPM: 4.8
MONOCYTES_1
17.0
MONOCYTES_2
14.9
MONOCYTES_3
13.7
MONOCYTES_4
13.7
MONOCYTES_5
13.4
MONOCYTES_6
13.2
MONOCYTES_7
13.0
MONOCYTES_8
12.8
MONOCYTES_9
12.8
MONOCYTES_10
12.6
MONOCYTES_11
12.3
MONOCYTES_12
12.2
MONOCYTES_13
12.0
MONOCYTES_14
12.0
MONOCYTES_15
11.9
MONOCYTES_16
11.9
MONOCYTES_17
11.8
MONOCYTES_18
11.7
MONOCYTES_19
11.7
MONOCYTES_20
11.6
MONOCYTES_21
11.6
MONOCYTES_22
11.5
MONOCYTES_23
11.1
MONOCYTES_24
10.9
MONOCYTES_25
10.9
MONOCYTES_26
10.9
MONOCYTES_27
10.8
MONOCYTES_28
10.5
MONOCYTES_29
10.5
MONOCYTES_30
10.5
MONOCYTES_31
10.2
MONOCYTES_32
10.1
MONOCYTES_33
10.1
MONOCYTES_34
10.0
MONOCYTES_35
10.0
MONOCYTES_36
9.9
MONOCYTES_37
9.7
MONOCYTES_38
9.7
MONOCYTES_39
9.6
MONOCYTES_40
9.5
MONOCYTES_41
9.4
MONOCYTES_42
9.3
MONOCYTES_43
9.1
MONOCYTES_44
9.0
MONOCYTES_45
9.0
MONOCYTES_46
9.0
MONOCYTES_47
9.0
MONOCYTES_48
8.9
MONOCYTES_49
8.8
MONOCYTES_50
8.8
MONOCYTES_51
8.7
MONOCYTES_52
8.6
MONOCYTES_53
8.6
MONOCYTES_54
8.4
MONOCYTES_55
8.2
MONOCYTES_56
8.1
MONOCYTES_57
8.0
MONOCYTES_58
8.0
MONOCYTES_59
8.0
MONOCYTES_60
7.9
MONOCYTES_61
7.9
MONOCYTES_62
7.8
MONOCYTES_63
7.7
MONOCYTES_64
7.7
MONOCYTES_65
7.5
MONOCYTES_66
7.5
MONOCYTES_67
7.5
MONOCYTES_68
7.4
MONOCYTES_69
7.4
MONOCYTES_70
7.3
MONOCYTES_71
7.2
MONOCYTES_72
7.2
MONOCYTES_73
7.1
MONOCYTES_74
7.1
MONOCYTES_75
7.1
MONOCYTES_76
7.0
MONOCYTES_77
6.9
MONOCYTES_78
6.9
MONOCYTES_79
6.8
MONOCYTES_80
6.7
MONOCYTES_81
6.4
MONOCYTES_82
6.1
MONOCYTES_83
6.0
MONOCYTES_84
5.9
MONOCYTES_85
5.5
MONOCYTES_86
5.5
MONOCYTES_87
5.2
MONOCYTES_88
5.0
MONOCYTES_89
5.0
MONOCYTES_90
5.0
MONOCYTES_91
4.8
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Non-classical monocyte TPM: 22.5
Samples: 90
Max TPM: 33.3
Min TPM: 11.8
M2_1
33.3
M2_2
32.8
M2_3
31.7
M2_4
31.0
M2_5
30.2
M2_6
29.6
M2_7
29.6
M2_8
29.4
M2_9
29.3
M2_10
29.1
M2_11
28.8
M2_12
28.3
M2_13
27.8
M2_14
27.6
M2_15
27.3
M2_16
27.3
M2_17
27.1
M2_18
27.0
M2_19
26.8
M2_20
26.7
M2_21
26.6
M2_22
26.6
M2_23
26.2
M2_24
26.1
M2_25
25.9
M2_26
25.5
M2_27
25.2
M2_28
25.1
M2_29
24.8
M2_30
24.7
M2_31
24.6
M2_32
24.5
M2_33
24.1
M2_34
23.8
M2_35
23.4
M2_36
23.1
M2_37
23.0
M2_38
22.9
M2_39
22.9
M2_40
22.8
M2_41
22.7
M2_42
22.6
M2_43
22.4
M2_44
22.3
M2_45
22.1
M2_46
22.1
M2_47
21.8
M2_48
21.7
M2_49
21.6
M2_50
21.6
M2_51
21.2
M2_52
21.2
M2_53
21.2
M2_54
21.1
M2_55
21.0
M2_56
20.8
M2_57
20.7
M2_58
20.6
M2_59
20.4
M2_60
20.4
M2_61
20.2
M2_62
20.2
M2_63
20.1
M2_64
19.8
M2_65
19.8
M2_66
19.3
M2_67
19.1
M2_68
19.0
M2_69
18.8
M2_70
18.7
M2_71
18.6
M2_72
18.6
M2_73
18.6
M2_74
18.5
M2_75
18.5
M2_76
17.9
M2_77
17.4
M2_78
17.3
M2_79
17.3
M2_80
17.1
M2_81
16.7
M2_82
16.6
M2_83
16.3
M2_84
16.1
M2_85
15.8
M2_86
15.7
M2_87
14.7
M2_88
13.9
M2_89
12.7
M2_90
11.8
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