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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:835.8 nTPM
HPA Brain:858.8 nTPM
GTEx:835.8 nTPM
FANTOM5:1056.1 Scaled Tags Per Million
Pig:373.2 nTPM
Mouse:617.2 nTPM
Allen mouse:32.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

858.8
Sample id Sample description nTPM
Amygdala
nTPM: 850.4
2695 Female, age 67, right hemisphere 1167.4
1987 Female, age 91, left hemisphere 879.9
2514 Male, age 75, right hemisphere 815.0
2517 Female, age 94, left hemisphere 737.3
2814 Male, age 76, right hemisphere 652.6
Basal amygdala
nTPM: 748.4
2609 Male, age 75, right hemisphere 937.4
2243 Female, age 91, right hemisphere 839.9
2110 Male, age 80, left hemisphere 757.0
2685 Female, age 94, left hemisphere 712.5
1955 Male, age 76, both hemispheres 709.7
2827 Female, age 67, right hemisphere 533.9
Central amygdala
nTPM: 858.8
2515 Male, age 75, right hemisphere 1186.8
2701 Female, age 91, right hemisphere 919.0
2239 Male, age 80, left hemisphere 777.4
2826 Female, age 94, left hemisphere 758.5
1905 Male, age 76, both hemispheres 652.4
Corticomedial amygdala
nTPM: 764.7
2428 Male, age 75, right hemisphere 976.2
2242 Female, age 91, right hemisphere 920.9
2829 Male, age 80, left hemisphere 864.4
2429 Female, age 94, left hemisphere 668.3
2240 Male, age 76, both hemispheres 636.3
2535 Female, age 67, right hemisphere 522.2
Lateral amygdala
nTPM: 703.8
2516 Male, age 75, right hemisphere 763.6
2255 Female, age 91, right hemisphere 759.9
1883 Male, age 76, both hemispheres 748.9
2256 Male, age 80, left hemisphere 713.5
2534 Female, age 94, left hemisphere 634.6
2830 Female, age 67, right hemisphere 602.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

835.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 835.8
Samples: 181

Max nTPM: 2215.2
Min nTPM: 192.4
Std nTPM: 322.8
Median nTPM: 809.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 2215.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1881.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1680.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1561.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1543.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1462.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1460.2
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 1459.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1414.9
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 1408.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1396.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1387.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 1349.3
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 1340.5
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 1319.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1304.5
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 1274.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1272.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1270.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1242.7
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 1231.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 1222.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1189.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1187.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1182.5
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 1173.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1164.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 1156.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1152.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1132.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1132.5
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 1130.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1120.2
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 1113.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1098.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1084.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 1083.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1082.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1061.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1049.7
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 1049.6
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 1042.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1040.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1022.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1018.4
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 1015.0
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 1006.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 1005.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 983.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 982.9
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 979.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 972.6
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 970.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 959.2
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 953.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 951.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 950.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 949.0
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 948.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 946.9
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 942.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 932.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 931.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 923.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 909.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 908.3
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 901.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 894.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 894.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 892.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 884.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 877.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 871.7
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 870.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 858.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 856.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 851.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 848.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 845.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 845.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 843.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 835.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 832.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 832.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 824.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 823.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 820.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 819.6
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 815.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 813.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 809.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 807.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 804.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 801.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 789.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 785.7
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 783.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 773.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 773.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 771.0
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 768.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 765.0
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 764.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 748.0
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 742.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 740.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 728.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 725.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 725.1
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 719.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 716.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 714.1
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 712.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 712.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 703.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 700.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 700.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 680.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 680.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 679.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 677.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 675.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 664.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 662.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 661.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 644.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 637.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 637.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 630.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 626.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 623.6
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 607.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 607.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 605.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 605.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 597.2
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 595.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 588.1
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 581.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 575.0
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 570.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 567.8
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 566.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 565.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 563.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 561.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 560.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 553.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 551.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 545.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 538.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 537.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 534.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 524.5
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 512.1
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 508.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 507.4
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 504.0
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 502.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 500.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 494.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 485.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 483.5
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 467.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 449.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 442.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 430.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 420.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 417.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 397.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 374.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 362.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 356.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 352.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 350.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 339.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 304.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 297.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 284.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 226.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 192.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1056.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1056.1
FF:10151-102I7 76 years, female 1056.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

373.2
Pig sample Sample description nTPM
Amygdala
nTPM: 373.2
Samples: 4

Max nTPM: 536.9
Min nTPM: 255.3
Sample A Female 536.9
Sample B Female 255.3
Sample C Male 330.8
Sample D Male 369.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

617.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 617.2
Samples: 4

Max nTPM: 665.1
Min nTPM: 586.7
Sample A Male 665.1
Sample B Male 586.7
Sample C Female 613.8
Sample D Female 603.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

32.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 32.6
68196976 Antisense, RP_040928_01_A06, Mouse strain C57BL/6J (56 days, male) 35.4
67936207 Antisense, RP_040928_01_A06, Mouse strain C57BL/6J (56 days, male) 35.2
77414652 Antisense, RP_070205_01_H10, Mouse strain C57BL/6J (56 days, male) 29.8

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