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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:266.3 nTPM
HPA Brain:976.0 nTPM
GTEx:266.3 nTPM
FANTOM5:1113.6 Scaled Tags Per Million
Pig:460.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

976.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 839.7
1981 Female, age 72, midline 984.5
2565 Male, age 75, midline 868.8
2048 Male, age 55, midline 822.3
2816 Male, age 47, midline 777.1
2194 Female, age 79, both hemispheres 746.0
Cervical spinal cord, dorsal horn
nTPM: 812.9
2173 Female, age 72, unknown 1050.9
2721 Male, age 90, both hemispheres 1027.2
1877 Male, age 55, unknown 920.8
2297 Male, age 75, both hemispheres 678.0
2069 Male, age 47, both hemispheres 649.3
2296 Male, age 66, both hemispheres 551.5
Cervical spinal cord, ventral horn
nTPM: 976.0
2809 Male, age 90, both hemispheres 1458.8
2295 Male, age 66, both hemispheres 1344.4
2098 Female, age 72, unknown 906.6
2480 Male, age 75, both hemispheres 829.1
2068 Male, age 55, unknown 669.6
2820 Female, age 79, both hemispheres 647.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

266.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 266.3
Samples: 204

Max nTPM: 760.1
Min nTPM: 86.8
Std nTPM: 122.3
Median nTPM: 242.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 760.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 716.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 636.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 633.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 627.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 542.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 529.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 526.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 510.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 491.4
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 490.8
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 452.1
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 450.3
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 450.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 449.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 447.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 443.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 440.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 438.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 436.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 436.0
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 435.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 430.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 429.0
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 410.0
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 409.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 409.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 405.6
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 400.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 397.3
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 391.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 390.7
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 386.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 378.5
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 378.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 376.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 374.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 372.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 367.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 363.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 363.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 361.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 358.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 356.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 354.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 351.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 350.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 350.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 348.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 338.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 335.9
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 328.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 324.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 322.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 320.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 311.7
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 310.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 309.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 309.1
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 307.7
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 306.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 305.9
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 305.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 304.6
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 299.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 298.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 298.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 297.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 295.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 290.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 290.6
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 286.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 283.6
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 283.0
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 281.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 279.8
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 279.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 278.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 276.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 270.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 270.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 269.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 268.4
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 266.2
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 264.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 261.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 260.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 260.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 254.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 252.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 252.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 251.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 250.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 249.4
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 249.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 247.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 246.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 245.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 244.7
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 244.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 243.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 243.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 241.1
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 239.7
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 239.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 238.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 237.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 236.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 234.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 233.3
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 231.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 230.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 230.2
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 229.7
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 229.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 228.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 228.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 225.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 225.6
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 225.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 221.7
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 220.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 219.5
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 218.1
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 218.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 216.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 215.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 214.4
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 213.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 212.0
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 210.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 209.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 209.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 207.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 205.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 202.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 201.8
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 198.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 195.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 195.7
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 193.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 193.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 193.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 193.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 191.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 190.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 189.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 189.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 188.6
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 187.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 184.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 184.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 182.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 181.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 180.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 178.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 175.3
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 175.0
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 172.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 171.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 171.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 170.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 167.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 167.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 162.6
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 159.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 157.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 155.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 153.8
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 149.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 148.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 147.3
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 146.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 145.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 143.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 138.6
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 138.6
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 137.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 136.6
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 134.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 133.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 133.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 132.1
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 130.7
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 130.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 128.8
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 124.5
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 123.8
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 121.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 121.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 115.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 113.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 108.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 107.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 104.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 98.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 97.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 97.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 93.9
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 91.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 91.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 91.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 87.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 86.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1113.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1113.6
FF:10181-103D1 60 years, female 1453.6
FF:10159-103A6 76 years, female 773.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

460.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 399.3
Samples: 4

Max nTPM: 426.7
Min nTPM: 374.3
Sample A Female 408.1
Sample B Female 426.7
Sample C Male 387.9
Sample D Male 374.3
Ventral spinal cord
nTPM: 460.2
Samples: 4

Max nTPM: 485.1
Min nTPM: 422.4
Sample A Female 453.0
Sample B Female 485.1
Sample C Male 422.4
Sample D Male 480.2

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