MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.0 nTPM
HPA Brain:36.4 nTPM
GTEx:2.0 nTPM
FANTOM5:12.1 Scaled Tags Per Million
Pig:19.3 nTPM
Mouse:11.4 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 36.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.2
1870 Female, age 42, unknown 16.1
1827 Male, age 72, unknown 15.4
2219 Male, age 76, both hemispheres 13.9
2828 Female, age 72, unknown 12.0
2411 Female, age 72, unknown 11.7
2586 Male, age 75, left hemisphere 10.8
1833 Male, age 53, unknown 9.4
2666 Male, age 74, left hemisphere 8.9
1830 Male, age 51, unknown 8.6
2019 Male, age 18, unknown 5.1
Dorsal raphe nucleus
nTPM: 27.8
2298 Female, age 72, unknown 43.3
2047 Male, age 72, unknown 36.6
2750 Male, age 76, both hemispheres 28.1
2016 Female, age 72, unknown 16.9
1828 Male, age 53, unknown 14.3
Inferior colliculus
nTPM: 12.9
2097 Female, age 72, unknown 15.5
1890 Male, age 53, unknown 12.2
1848 Female, age 42, unknown 12.0
2849 Male, age 72, unknown 11.7
Median raphe nucleus
nTPM: 36.4
2220 Male, age 76, midline 36.4
Periaquaductal grey, anterior
nTPM: 21.7
1795 Male, age 51, unknown 27.2
1947 Male, age 18, unknown 23.4
2502 Female, age 75, unknown 14.6
Periaquaductal grey, dorsal
nTPM: 25.0
1840 Male, age 53, unknown 30.4
1831 Male, age 72, unknown 29.6
2850 Male, age 76, both hemispheres 22.5
2464 Female, age 72, unknown 17.5
Periaquaductal grey, lateral
nTPM: 24.5
2053 Male, age 18, unknown 31.8
2272 Male, age 74, both hemispheres 21.2
2140 Male, age 76, both hemispheres 20.5
Pretectal area
nTPM: 16.4
2825 Male, age 18, unknown 31.3
2273 Male, age 74, both hemispheres 24.5
2224 Female, age 72, unknown 20.3
1816 Male, age 51, unknown 18.4
2407 Male, age 75, both hemispheres 15.9
1944 Female, age 72, unknown 15.1
1815 Male, age 53, unknown 13.2
2316 Male, age 76, right hemisphere 12.7
1817 Female, age 42, unknown 10.6
2667 Female, age 75, unknown 9.4
2007 Male, age 72, unknown 8.4
Red nucleus
nTPM: 7.0
2725 Female, age 75, unknown 14.0
2584 Male, age 75, left hemisphere 11.5
2503 Female, age 72, unknown 7.8
2588 Male, age 74, left hemisphere 7.1
2823 Male, age 76, right hemisphere 6.6
2227 Male, age 72, unknown 5.8
1821 Female, age 72, unknown 5.7
1904 Male, age 53, unknown 5.5
1954 Female, age 42, unknown 5.4
2769 Male, age 72, unknown 5.1
2785 Male, age 18, unknown 5.1
1865 Male, age 51, unknown 4.7
Substantia nigra
nTPM: 9.8
2590 Female, age 75, unknown 16.0
2583 Male, age 75, right hemisphere 14.3
1941 Male, age 53, unknown 14.1
2241 Male, age 72, unknown 11.2
1889 Female, age 72, unknown 10.1
2665 Male, age 74, both hemispheres 9.4
2409 Female, age 72, unknown 7.5
1851 Male, age 51, unknown 7.3
2699 Male, age 18, unknown 5.1
1916 Female, age 42, unknown 3.5
Superior colliculus
nTPM: 15.3
2664 Male, age 75, both hemispheres 21.1
2261 Male, age 18, unknown 20.8
1913 Female, age 42, unknown 19.8
1796 Male, age 53, unknown 16.9
2087 Female, age 72, unknown 16.2
2587 Male, age 74, left hemisphere 13.8
1995 Male, age 72, unknown 13.4
1895 Male, age 76, right hemisphere 11.1
1839 Male, age 51, unknown 10.7
2668 Female, age 75, unknown 9.6
Ventral tegmental area
nTPM: 17.4
1942 Male, age 51, unknown 29.1
2021 Male, age 53, unknown 21.6
2223 Female, age 72, unknown 17.7
2218 Male, age 76, both hemispheres 17.0
1915 Female, age 42, unknown 10.4
2410 Female, age 72, unknown 8.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 2.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.0
Samples: 183

Max nTPM: 7.9
Min nTPM: 0.6
Std nTPM: 1.0
Median nTPM: 1.7
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 7.9
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 7.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 6.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 5.5
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 5.1
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 4.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 4.4
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 4.4
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 4.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 4.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 4.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 12.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.1
FF:10158-103A5 76 years, female 12.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 19.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.3
Samples: 4

Max nTPM: 13.6
Min nTPM: 8.6
Sample A Female 13.6
Sample B Female 13.6
Sample C Male 13.5
Sample D Male 8.6
Midbrain
nTPM: 16.3
Samples: 4

Max nTPM: 21.1
Min nTPM: 12.4
Sample A Female 17.6
Sample B Female 12.4
Sample C Male 21.1
Sample D Male 14.2
Periaqueductal gray
nTPM: 19.3
Samples: 3

Max nTPM: 23.8
Min nTPM: 13.0
Sample B Female 13.0
Sample C Male 23.8
Sample D Male 21.0
Superior colliculi
nTPM: 10.7
Samples: 4

Max nTPM: 12.9
Min nTPM: 9.0
Sample A Female 10.8
Sample B Female 9.0
Sample C Male 10.2
Sample D Male 12.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 11.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.4
Samples: 4

Max nTPM: 12.1
Min nTPM: 9.9
Sample A Male 9.9
Sample B Male 11.6
Sample C Female 11.8
Sample D Female 12.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
820 Antisense, RP_Baylor_103204, Mouse strain C57BL/6J (56 days, male) 0.0
821 Antisense, RP_Baylor_103204, Mouse strain C57BL/6J (56 days, male) 0.0

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