HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:390.2 nTPM
HPA Brain:502.2 nTPM
GTEx:390.2 nTPM
FANTOM5:1072.9 Scaled Tags Per Million
Pig:668.0 nTPM
Mouse:651.1 nTPM
Allen mouse:26.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA029292Antibody HPA071992
Glial cells LowHigh
Neuronal cells HighHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 502.2
Sample id Sample description nTPM
Hippocampus
nTPM: 502.2
1898 Male, age 80, left hemisphere 665.8
1855 Male, age 76, left hemisphere 579.5
2621 Female, age 67, right hemisphere 503.3
1911 Female, age 85, right hemisphere 477.4
2529 Female, age 94, left hemisphere 414.1
2148 Female, age 91, left hemisphere 373.1
Dentate gyrus
nTPM: 452.8
2010 Male, age 76, both hemispheres 603.2
1927 Female, age 91, both hemispheres 534.0
2530 Female, age 94, left hemisphere 486.3
2246 Female, age 85, both hemispheres 439.7
2528 Male, age 74, both hemispheres 347.6
2531 Female, age 67, both hemispheres 306.1
Entorhinal gyrus
nTPM: 340.8
2117 Female, age 91, right hemisphere 428.0
1938 Female, age 85, left hemisphere 398.0
2764 Male, age 80, right hemisphere 350.0
1787 Male, age 76, left hemisphere 333.1
2613 Female, age 94, left hemisphere 274.8
2686 Male, age 75, right hemisphere 261.2
Hippocampus, CA1
nTPM: 501.7
2749 Male, age 80, left hemisphere 750.4
1873 Female, age 85, both hemispheres 648.1
2045 Male, age 76, both hemispheres 431.8
2527 Male, age 74, both hemispheres 426.7
2082 Female, age 91, right hemisphere 251.4
Hippocampus, CA2
nTPM: 474.1
1892 Male, age 76, both hemispheres 689.0
1963 Male, age 80, left hemisphere 647.7
1940 Female, age 85, left hemisphere 413.3
2249 Male, age 74, both hemispheres 393.3
2437 Female, age 94, left hemisphere 391.1
2113 Female, age 91, right hemisphere 310.2
Hippocampus, CA3
nTPM: 430.9
2137 Male, age 80, left hemisphere 469.1
2436 Male, age 74, both hemispheres 462.0
1867 Male, age 76, both hemispheres 429.7
2620 Female, age 94, left hemisphere 428.0
2861 Female, age 67, both hemispheres 408.2
1891 Female, age 85, both hemispheres 388.3
Parahippocampal cortex
nTPM: 338.3
2018 Male, age 76, both hemispheres 395.3
2245 Female, age 91, both hemispheres 390.9
1850 Male, age 80, both hemispheres 378.6
1933 Female, age 85, both hemispheres 362.4
1990 Female, age 91, right hemisphere 349.0
2250 Female, age 67, right hemisphere 346.2
2532 Female, age 72, left hemisphere 317.6
2692 Male, age 74, both hemispheres 285.8
2622 Female, age 67, right hemisphere 283.7
2693 Female, age 94, both hemispheres 273.2
Perirhinal gyrus
nTPM: 362.5
1841 Female, age 85, right hemisphere 407.4
1794 Male, age 80, right hemisphere 394.9
1847 Female, age 91, left hemisphere 361.5
2521 Female, age 94, right hemisphere 340.6
2848 Male, age 76, right hemisphere 308.2
Subiculum
nTPM: 390.4
2042 Male, age 76, both hemispheres 524.5
1901 Male, age 80, both hemispheres 459.6
2619 Male, age 74, both hemispheres 355.2
1977 Female, age 85, both hemispheres 345.8
2438 Female, age 94, left hemisphere 341.2
2729 Female, age 91, right hemisphere 316.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 390.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 390.2
Samples: 255

Max nTPM: 946.0
Min nTPM: 169.4
Std nTPM: 123.2
Median nTPM: 366.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 946.0
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 753.5
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 751.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 743.4
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 710.9
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 706.6
GTEX-13SLX-0011-R1a-SM-H6Q8N 50-59 years, female 701.8
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 688.6
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 677.9
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 667.3
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 664.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1072.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 1072.9
FF:10169-103B7 60 years, female 1239.0
FF:10153-102I9 76 years, female 906.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 668.0
Pig sample Sample description nTPM
Subiculum
nTPM: 447.1
Samples: 4

Max nTPM: 559.0
Min nTPM: 361.3
Sample A Female 559.0
Sample B Female 433.6
Sample C Male 361.3
Sample D Male 434.5
Dorsal hippocampus
nTPM: 668.0
Samples: 4

Max nTPM: 899.0
Min nTPM: 551.4
Sample A Female 899.0
Sample B Female 645.5
Sample C Male 576.2
Sample D Male 551.4
Entorhinal cortex
nTPM: 458.2
Samples: 4

Max nTPM: 549.2
Min nTPM: 340.8
Sample A Female 482.4
Sample B Female 549.2
Sample C Male 460.3
Sample D Male 340.8
Ventral hippocampus
nTPM: 520.5
Samples: 4

Max nTPM: 619.8
Min nTPM: 404.3
Sample A Female 619.8
Sample B Female 404.3
Sample C Male 532.5
Sample D Male 525.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 651.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 574.1
Samples: 4

Max nTPM: 584.2
Min nTPM: 567.0
Sample A Male 567.0
Sample B Male 568.7
Sample C Female 584.2
Sample D Female 576.4
Hippocampal formation
nTPM: 651.1
Samples: 4

Max nTPM: 671.4
Min nTPM: 620.6
Sample A Male 666.0
Sample B Male 646.2
Sample C Female 671.4
Sample D Female 620.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 26.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 26.9
532581 Antisense, RP_040810_02_C03, Mouse strain C57BL/6J (56 days, male) 26.9

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