MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:126.5 nTPM
HPA Brain:304.0 nTPM
GTEx:126.5 nTPM
FANTOM5:131.0 Scaled Tags Per Million
Pig:104.1 nTPM
Mouse:106.3 nTPM
Allen mouse:8.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 304.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 185.3
2219 Male, age 76, both hemispheres 217.8
2586 Male, age 75, left hemisphere 205.4
2828 Female, age 72, unknown 193.7
2019 Male, age 18, unknown 192.9
1827 Male, age 72, unknown 192.7
1870 Female, age 42, unknown 180.1
2411 Female, age 72, unknown 178.0
1833 Male, age 53, unknown 171.5
2666 Male, age 74, left hemisphere 162.3
1830 Male, age 51, unknown 159.0
Dorsal raphe nucleus
nTPM: 191.5
2298 Female, age 72, unknown 202.5
2750 Male, age 76, both hemispheres 192.1
1828 Male, age 53, unknown 191.5
2047 Male, age 72, unknown 186.8
2016 Female, age 72, unknown 184.9
Inferior colliculus
nTPM: 176.4
1890 Male, age 53, unknown 202.5
2097 Female, age 72, unknown 181.1
1848 Female, age 42, unknown 161.7
2849 Male, age 72, unknown 160.4
Median raphe nucleus
nTPM: 190.5
2220 Male, age 76, midline 190.5
Periaquaductal grey, anterior
nTPM: 157.5
2502 Female, age 75, unknown 195.1
1795 Male, age 51, unknown 157.1
1947 Male, age 18, unknown 120.2
Periaquaductal grey, dorsal
nTPM: 169.8
1840 Male, age 53, unknown 192.5
1831 Male, age 72, unknown 170.3
2464 Female, age 72, unknown 158.5
2850 Male, age 76, both hemispheres 158.0
Periaquaductal grey, lateral
nTPM: 157.4
2053 Male, age 18, unknown 168.8
2140 Male, age 76, both hemispheres 161.2
2272 Male, age 74, both hemispheres 142.2
Pretectal area
nTPM: 186.6
1944 Female, age 72, unknown 215.5
1816 Male, age 51, unknown 208.2
1815 Male, age 53, unknown 200.6
2667 Female, age 75, unknown 200.0
2007 Male, age 72, unknown 198.3
1817 Female, age 42, unknown 181.0
2224 Female, age 72, unknown 176.3
2407 Male, age 75, both hemispheres 173.5
2825 Male, age 18, unknown 172.0
2273 Male, age 74, both hemispheres 169.3
2316 Male, age 76, right hemisphere 157.7
Red nucleus
nTPM: 175.7
1821 Female, age 72, unknown 213.2
2588 Male, age 74, left hemisphere 186.2
2785 Male, age 18, unknown 185.4
2503 Female, age 72, unknown 181.2
2584 Male, age 75, left hemisphere 177.9
2227 Male, age 72, unknown 172.6
1904 Male, age 53, unknown 170.7
1865 Male, age 51, unknown 170.3
2769 Male, age 72, unknown 168.0
2823 Male, age 76, right hemisphere 163.4
1954 Female, age 42, unknown 162.9
2725 Female, age 75, unknown 156.3
Substantia nigra
nTPM: 304.0
1916 Female, age 42, unknown 491.9
1851 Male, age 51, unknown 368.0
2241 Male, age 72, unknown 355.5
2699 Male, age 18, unknown 340.9
2409 Female, age 72, unknown 276.1
1941 Male, age 53, unknown 270.9
2665 Male, age 74, both hemispheres 259.1
2583 Male, age 75, right hemisphere 231.8
2590 Female, age 75, unknown 222.8
1889 Female, age 72, unknown 222.7
Superior colliculus
nTPM: 178.1
2087 Female, age 72, unknown 200.9
2668 Female, age 75, unknown 193.3
1796 Male, age 53, unknown 193.0
2587 Male, age 74, left hemisphere 186.0
2664 Male, age 75, both hemispheres 183.3
2261 Male, age 18, unknown 178.5
1839 Male, age 51, unknown 165.9
1895 Male, age 76, right hemisphere 164.7
1913 Female, age 42, unknown 159.9
1995 Male, age 72, unknown 155.4
Ventral tegmental area
nTPM: 246.9
1915 Female, age 42, unknown 303.4
2410 Female, age 72, unknown 279.6
2218 Male, age 76, both hemispheres 264.2
2223 Female, age 72, unknown 226.0
1942 Male, age 51, unknown 218.1
2021 Male, age 53, unknown 189.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 126.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 126.5
Samples: 183

Max nTPM: 220.5
Min nTPM: 32.0
Std nTPM: 29.1
Median nTPM: 126.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 220.5
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 201.5
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 197.8
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 195.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 191.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 191.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 189.2
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 188.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 178.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 174.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 174.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 131.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 131.0
FF:10158-103A5 76 years, female 131.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 104.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 93.6
Samples: 4

Max nTPM: 116.8
Min nTPM: 65.5
Sample A Female 114.7
Sample B Female 65.5
Sample C Male 116.8
Sample D Male 77.4
Midbrain
nTPM: 104.1
Samples: 4

Max nTPM: 119.9
Min nTPM: 79.0
Sample A Female 116.6
Sample B Female 79.0
Sample C Male 119.9
Sample D Male 100.9
Periaqueductal gray
nTPM: 69.5
Samples: 3

Max nTPM: 76.3
Min nTPM: 61.7
Sample B Female 70.6
Sample C Male 76.3
Sample D Male 61.7
Superior colliculi
nTPM: 96.7
Samples: 4

Max nTPM: 122.9
Min nTPM: 65.8
Sample A Female 96.1
Sample B Female 65.8
Sample C Male 122.9
Sample D Male 101.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 106.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 106.3
Samples: 4

Max nTPM: 115.2
Min nTPM: 97.4
Sample A Male 97.4
Sample B Male 105.4
Sample C Female 115.2
Sample D Female 107.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 8.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.3
74357551 Antisense, RP_051214_01_B03, Mouse strain C57BL/6J (56 days, male) 10.4
68795416 Antisense, RP_041122_01_C04, Mouse strain C57BL/6J (56 days, male) 6.3

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