MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.4 nTPM
HPA Brain:67.4 nTPM
GTEx:43.4 nTPM
FANTOM5:180.6 Scaled Tags Per Million
Pig:83.6 nTPM
Mouse:0.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 67.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 55.7
1870 Female, age 42, unknown 73.3
1833 Male, age 53, unknown 62.1
1830 Male, age 51, unknown 58.9
2828 Female, age 72, unknown 58.8
2666 Male, age 74, left hemisphere 57.5
2019 Male, age 18, unknown 55.9
2411 Female, age 72, unknown 51.3
1827 Male, age 72, unknown 49.8
2219 Male, age 76, both hemispheres 44.6
2586 Male, age 75, left hemisphere 44.5
Dorsal raphe nucleus
nTPM: 59.3
2016 Female, age 72, unknown 63.9
2750 Male, age 76, both hemispheres 61.6
1828 Male, age 53, unknown 60.5
2047 Male, age 72, unknown 56.4
2298 Female, age 72, unknown 54.1
Inferior colliculus
nTPM: 54.5
1848 Female, age 42, unknown 58.1
2849 Male, age 72, unknown 56.4
1890 Male, age 53, unknown 52.6
2097 Female, age 72, unknown 51.0
Median raphe nucleus
nTPM: 62.2
2220 Male, age 76, midline 62.2
Periaquaductal grey, anterior
nTPM: 48.5
2502 Female, age 75, unknown 54.8
1795 Male, age 51, unknown 47.5
1947 Male, age 18, unknown 43.3
Periaquaductal grey, dorsal
nTPM: 64.9
2850 Male, age 76, both hemispheres 87.3
1840 Male, age 53, unknown 59.0
2464 Female, age 72, unknown 56.9
1831 Male, age 72, unknown 56.3
Periaquaductal grey, lateral
nTPM: 67.4
2140 Male, age 76, both hemispheres 84.1
2053 Male, age 18, unknown 65.5
2272 Male, age 74, both hemispheres 52.5
Pretectal area
nTPM: 52.9
2316 Male, age 76, right hemisphere 64.2
2667 Female, age 75, unknown 62.3
2224 Female, age 72, unknown 59.6
2825 Male, age 18, unknown 55.3
2273 Male, age 74, both hemispheres 54.9
1817 Female, age 42, unknown 54.5
1815 Male, age 53, unknown 53.1
2407 Male, age 75, both hemispheres 50.0
1816 Male, age 51, unknown 46.8
1944 Female, age 72, unknown 42.4
2007 Male, age 72, unknown 39.2
Red nucleus
nTPM: 65.9
1904 Male, age 53, unknown 79.3
1865 Male, age 51, unknown 76.0
2227 Male, age 72, unknown 73.0
2503 Female, age 72, unknown 72.9
1821 Female, age 72, unknown 72.3
1954 Female, age 42, unknown 71.2
2769 Male, age 72, unknown 66.6
2823 Male, age 76, right hemisphere 66.0
2785 Male, age 18, unknown 59.9
2725 Female, age 75, unknown 56.4
2588 Male, age 74, left hemisphere 54.6
2584 Male, age 75, left hemisphere 42.1
Substantia nigra
nTPM: 58.9
2699 Male, age 18, unknown 78.7
2241 Male, age 72, unknown 65.6
2409 Female, age 72, unknown 64.3
2665 Male, age 74, both hemispheres 63.9
1851 Male, age 51, unknown 57.7
1889 Female, age 72, unknown 56.2
2590 Female, age 75, unknown 55.7
1916 Female, age 42, unknown 54.5
1941 Male, age 53, unknown 49.4
2583 Male, age 75, right hemisphere 43.3
Superior colliculus
nTPM: 56.9
1995 Male, age 72, unknown 73.2
1913 Female, age 42, unknown 73.0
2587 Male, age 74, left hemisphere 62.0
1895 Male, age 76, right hemisphere 57.5
1839 Male, age 51, unknown 55.3
2087 Female, age 72, unknown 53.8
1796 Male, age 53, unknown 51.8
2668 Female, age 75, unknown 50.2
2261 Male, age 18, unknown 47.4
2664 Male, age 75, both hemispheres 44.9
Ventral tegmental area
nTPM: 59.6
2223 Female, age 72, unknown 70.6
2021 Male, age 53, unknown 59.7
2410 Female, age 72, unknown 59.5
2218 Male, age 76, both hemispheres 56.7
1915 Female, age 42, unknown 55.9
1942 Male, age 51, unknown 55.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 43.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.4
Samples: 183

Max nTPM: 98.3
Min nTPM: 17.8
Std nTPM: 13.6
Median nTPM: 40.7
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 98.3
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 82.9
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 78.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 75.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 72.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 72.5
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 72.3
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 71.2
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 70.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 70.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 68.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 180.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 180.6
FF:10158-103A5 76 years, female 180.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 83.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 83.4
Samples: 4

Max nTPM: 92.1
Min nTPM: 77.0
Sample A Female 85.8
Sample B Female 77.0
Sample C Male 78.6
Sample D Male 92.1
Midbrain
nTPM: 83.6
Samples: 4

Max nTPM: 148.9
Min nTPM: 50.8
Sample A Female 148.9
Sample B Female 70.8
Sample C Male 64.0
Sample D Male 50.8
Periaqueductal gray
nTPM: 70.9
Samples: 3

Max nTPM: 73.9
Min nTPM: 69.0
Sample B Female 69.0
Sample C Male 69.7
Sample D Male 73.9
Superior colliculi
nTPM: 75.9
Samples: 4

Max nTPM: 85.5
Min nTPM: 72.2
Sample A Female 73.6
Sample B Female 85.5
Sample C Male 72.3
Sample D Male 72.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.2
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.0
Sample A Male 0.2
Sample B Male 0.3
Sample C Female 0.0
Sample D Female 0.2

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