MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.9 nTPM
HPA Brain:26.4 nTPM
GTEx:35.9 nTPM
FANTOM5:42.1 Scaled Tags Per Million
Pig:19.2 nTPM
Mouse:8.7 nTPM
Allen mouse:1.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 26.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.5
2019 Male, age 18, unknown 31.8
2411 Female, age 72, unknown 26.8
1827 Male, age 72, unknown 22.5
2219 Male, age 76, both hemispheres 22.0
1870 Female, age 42, unknown 20.3
1830 Male, age 51, unknown 20.1
2828 Female, age 72, unknown 20.1
1833 Male, age 53, unknown 18.5
2666 Male, age 74, left hemisphere 17.1
2586 Male, age 75, left hemisphere 16.1
Dorsal raphe nucleus
nTPM: 23.5
2298 Female, age 72, unknown 29.8
1828 Male, age 53, unknown 25.5
2750 Male, age 76, both hemispheres 21.7
2047 Male, age 72, unknown 20.5
2016 Female, age 72, unknown 20.2
Inferior colliculus
nTPM: 24.2
2097 Female, age 72, unknown 29.0
1890 Male, age 53, unknown 27.2
1848 Female, age 42, unknown 23.0
2849 Male, age 72, unknown 17.7
Median raphe nucleus
nTPM: 23.1
2220 Male, age 76, midline 23.1
Periaquaductal grey, anterior
nTPM: 23.6
2502 Female, age 75, unknown 26.1
1947 Male, age 18, unknown 22.9
1795 Male, age 51, unknown 21.8
Periaquaductal grey, dorsal
nTPM: 20.6
2464 Female, age 72, unknown 21.8
1840 Male, age 53, unknown 21.3
2850 Male, age 76, both hemispheres 20.0
1831 Male, age 72, unknown 19.4
Periaquaductal grey, lateral
nTPM: 21.6
2272 Male, age 74, both hemispheres 27.1
2140 Male, age 76, both hemispheres 20.5
2053 Male, age 18, unknown 17.3
Pretectal area
nTPM: 24.1
2007 Male, age 72, unknown 31.3
1817 Female, age 42, unknown 28.8
1944 Female, age 72, unknown 28.5
2273 Male, age 74, both hemispheres 27.0
1816 Male, age 51, unknown 25.0
1815 Male, age 53, unknown 24.8
2224 Female, age 72, unknown 23.1
2667 Female, age 75, unknown 21.9
2316 Male, age 76, right hemisphere 20.7
2825 Male, age 18, unknown 17.9
2407 Male, age 75, both hemispheres 16.3
Red nucleus
nTPM: 24.2
1821 Female, age 72, unknown 30.7
2725 Female, age 75, unknown 26.6
1865 Male, age 51, unknown 25.4
2785 Male, age 18, unknown 25.4
1954 Female, age 42, unknown 25.0
1904 Male, age 53, unknown 24.8
2227 Male, age 72, unknown 24.5
2503 Female, age 72, unknown 24.1
2823 Male, age 76, right hemisphere 23.8
2769 Male, age 72, unknown 23.1
2588 Male, age 74, left hemisphere 19.5
2584 Male, age 75, left hemisphere 17.3
Substantia nigra
nTPM: 26.4
1916 Female, age 42, unknown 34.1
2241 Male, age 72, unknown 32.0
1889 Female, age 72, unknown 30.2
1851 Male, age 51, unknown 29.2
2409 Female, age 72, unknown 27.5
1941 Male, age 53, unknown 26.7
2699 Male, age 18, unknown 23.4
2590 Female, age 75, unknown 22.7
2665 Male, age 74, both hemispheres 21.0
2583 Male, age 75, right hemisphere 17.7
Superior colliculus
nTPM: 21.7
2587 Male, age 74, left hemisphere 26.2
2087 Female, age 72, unknown 25.7
2261 Male, age 18, unknown 25.0
2668 Female, age 75, unknown 21.7
1796 Male, age 53, unknown 21.5
1895 Male, age 76, right hemisphere 21.3
1913 Female, age 42, unknown 20.6
1839 Male, age 51, unknown 20.3
1995 Male, age 72, unknown 20.3
2664 Male, age 75, both hemispheres 14.7
Ventral tegmental area
nTPM: 25.2
2410 Female, age 72, unknown 28.4
1915 Female, age 42, unknown 28.0
2218 Male, age 76, both hemispheres 26.8
2223 Female, age 72, unknown 24.1
1942 Male, age 51, unknown 24.0
2021 Male, age 53, unknown 19.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 35.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.9
Samples: 183

Max nTPM: 63.9
Min nTPM: 22.0
Std nTPM: 7.2
Median nTPM: 35.1
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 63.9
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 59.6
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 56.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 53.9
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 52.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 51.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 51.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 51.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 49.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 49.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 49.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 42.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 42.1
FF:10158-103A5 76 years, female 42.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 19.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.7
Samples: 4

Max nTPM: 20.2
Min nTPM: 11.2
Sample A Female 17.5
Sample B Female 17.8
Sample C Male 20.2
Sample D Male 11.2
Midbrain
nTPM: 18.6
Samples: 4

Max nTPM: 22.3
Min nTPM: 14.9
Sample A Female 17.0
Sample B Female 20.1
Sample C Male 22.3
Sample D Male 14.9
Periaqueductal gray
nTPM: 16.9
Samples: 3

Max nTPM: 19.1
Min nTPM: 13.1
Sample B Female 18.5
Sample C Male 19.1
Sample D Male 13.1
Superior colliculi
nTPM: 19.3
Samples: 4

Max nTPM: 26.4
Min nTPM: 14.1
Sample A Female 18.9
Sample B Female 17.6
Sample C Male 26.4
Sample D Male 14.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 8.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.8
Samples: 4

Max nTPM: 9.2
Min nTPM: 7.8
Sample A Male 7.8
Sample B Male 9.2
Sample C Female 9.2
Sample D Female 8.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
71020791 Antisense, RP_050505_01_G07, Mouse strain C57BL/6J (56 days, male) 1.0

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo