We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
ABI1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • ABI1
TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:20.8 nTPM
HPA Brain:45.5 nTPM
GTEx:20.8 nTPM
FANTOM5:125.4 Scaled Tags Per Million
Pig:39.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

45.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 41.7
2048 Male, age 55, midline 51.1
1981 Female, age 72, midline 44.2
2565 Male, age 75, midline 39.3
2816 Male, age 47, midline 38.5
2194 Female, age 79, both hemispheres 35.2
Cervical spinal cord, dorsal horn
nTPM: 45.5
2721 Male, age 90, both hemispheres 50.9
2069 Male, age 47, both hemispheres 47.1
2297 Male, age 75, both hemispheres 46.9
2173 Female, age 72, unknown 45.5
1877 Male, age 55, unknown 42.8
2296 Male, age 66, both hemispheres 40.0
Cervical spinal cord, ventral horn
nTPM: 43.5
2098 Female, age 72, unknown 54.6
2809 Male, age 90, both hemispheres 51.5
2295 Male, age 66, both hemispheres 47.6
2480 Male, age 75, both hemispheres 42.5
2820 Female, age 79, both hemispheres 33.0
2068 Male, age 55, unknown 32.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

20.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 20.8
Samples: 159

Max nTPM: 36.4
Min nTPM: 12.7
Std nTPM: 4.0
Median nTPM: 20.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 36.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 33.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 32.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 31.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 30.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 30.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 29.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 29.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 29.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 27.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 26.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 26.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 26.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 26.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 26.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 25.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 25.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 25.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 25.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 25.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 25.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 25.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 25.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 24.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 24.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 24.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 24.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 24.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 24.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 24.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 24.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 24.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 23.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 23.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 23.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 23.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 23.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 23.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 22.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 22.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 22.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 22.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 22.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 22.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 22.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 22.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 22.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 22.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 21.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 21.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 21.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 21.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 21.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 21.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 21.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 21.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 21.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 21.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 21.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 21.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 21.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 21.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 21.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 21.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 21.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 20.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 20.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 20.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 20.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 20.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 20.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 20.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 20.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 20.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 20.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 20.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 20.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 20.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 20.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 20.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 20.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 20.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 20.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 20.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 20.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 20.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 20.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 19.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 19.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 19.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 19.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 19.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 19.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 19.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 19.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 19.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 19.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 19.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 19.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 19.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 19.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 19.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 19.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 18.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 18.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 18.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 18.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 18.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 18.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 18.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 18.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 18.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 18.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 18.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 18.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 18.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 18.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 17.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 17.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 17.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 17.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 17.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 17.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 17.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 17.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 17.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 17.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 17.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 17.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 17.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 17.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 17.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 17.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 17.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 17.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 17.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 17.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 16.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 16.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 16.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 16.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 16.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 16.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 16.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 16.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 16.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 15.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 15.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 15.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 15.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 15.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 15.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 15.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 15.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 14.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 14.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 14.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 12.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 12.7
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

125.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 125.4
FF:10181-103D1 60 years, female 126.0
FF:10159-103A6 76 years, female 124.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

39.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 39.1
Samples: 4

Max nTPM: 44.4
Min nTPM: 34.6
Sample A Female 34.6
Sample B Female 44.4
Sample C Male 42.3
Sample D Male 35.0
Ventral spinal cord
nTPM: 38.7
Samples: 4

Max nTPM: 42.2
Min nTPM: 36.0
Sample A Female 36.0
Sample B Female 37.7
Sample C Male 38.7
Sample D Male 42.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org