BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1476.7 nTPM
HPA Brain:500.7 nTPM
GTEx:1476.7 nTPM
FANTOM5:365.2 Scaled Tags Per Million
Macaque:185.0 nTPM
Mouse:129.9 nTPM
Rat:2.8 nTPM
Pig:389.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 500.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 443.0
2666 Male, age 74, left hemisphere 543.6
2586 Male, age 75, left hemisphere 513.2
1870 Female, age 42, unknown 481.0
2828 Female, age 72, unknown 448.0
1833 Male, age 53, unknown 445.1
1827 Male, age 72, unknown 424.8
1830 Male, age 51, unknown 424.4
2411 Female, age 72, unknown 389.3
2019 Male, age 18, unknown 383.6
2219 Male, age 76, both hemispheres 376.6
Dorsal raphe nucleus
nTPM: 444.0
2298 Female, age 72, unknown 473.7
2750 Male, age 76, both hemispheres 466.0
2016 Female, age 72, unknown 440.9
2047 Male, age 72, unknown 433.3
1828 Male, age 53, unknown 406.1
Inferior colliculus
nTPM: 434.7
2849 Male, age 72, unknown 493.1
2097 Female, age 72, unknown 439.2
1890 Male, age 53, unknown 416.1
1848 Female, age 42, unknown 390.5
Median raphe nucleus
nTPM: 488.8
2220 Male, age 76, midline 488.8
Periaquaductal grey, anterior
nTPM: 463.1
2502 Female, age 75, unknown 496.8
1795 Male, age 51, unknown 463.4
1947 Male, age 18, unknown 429.2
Periaquaductal grey, dorsal
nTPM: 440.9
2850 Male, age 76, both hemispheres 501.9
1840 Male, age 53, unknown 486.1
1831 Male, age 72, unknown 413.5
2464 Female, age 72, unknown 362.1
Periaquaductal grey, lateral
nTPM: 433.1
2053 Male, age 18, unknown 481.3
2140 Male, age 76, both hemispheres 433.4
2272 Male, age 74, both hemispheres 384.6
Pretectal area
nTPM: 429.1
1817 Female, age 42, unknown 469.0
1815 Male, age 53, unknown 450.8
2224 Female, age 72, unknown 445.7
2825 Male, age 18, unknown 445.7
1816 Male, age 51, unknown 444.5
1944 Female, age 72, unknown 432.3
2007 Male, age 72, unknown 432.1
2316 Male, age 76, right hemisphere 413.9
2667 Female, age 75, unknown 409.4
2407 Male, age 75, both hemispheres 404.1
2273 Male, age 74, both hemispheres 372.6
Red nucleus
nTPM: 451.1
2503 Female, age 72, unknown 549.3
1904 Male, age 53, unknown 485.4
2584 Male, age 75, left hemisphere 480.3
2725 Female, age 75, unknown 478.6
1821 Female, age 72, unknown 474.9
1865 Male, age 51, unknown 460.1
2227 Male, age 72, unknown 431.8
2769 Male, age 72, unknown 431.4
2785 Male, age 18, unknown 425.1
2588 Male, age 74, left hemisphere 410.4
1954 Female, age 42, unknown 407.6
2823 Male, age 76, right hemisphere 378.3
Substantia nigra
nTPM: 500.7
2699 Male, age 18, unknown 609.6
1916 Female, age 42, unknown 580.6
1851 Male, age 51, unknown 569.4
2665 Male, age 74, both hemispheres 561.4
2409 Female, age 72, unknown 517.0
2241 Male, age 72, unknown 495.4
1889 Female, age 72, unknown 461.6
2590 Female, age 75, unknown 418.1
1941 Male, age 53, unknown 399.3
2583 Male, age 75, right hemisphere 395.1
Superior colliculus
nTPM: 467.7
2587 Male, age 74, left hemisphere 519.6
1913 Female, age 42, unknown 503.8
2668 Female, age 75, unknown 503.6
1796 Male, age 53, unknown 496.5
2664 Male, age 75, both hemispheres 494.3
1995 Male, age 72, unknown 491.1
2261 Male, age 18, unknown 424.7
1839 Male, age 51, unknown 423.0
2087 Female, age 72, unknown 410.7
1895 Male, age 76, right hemisphere 410.0
Ventral tegmental area
nTPM: 491.8
1915 Female, age 42, unknown 571.8
2223 Female, age 72, unknown 528.4
2021 Male, age 53, unknown 505.4
2218 Male, age 76, both hemispheres 460.6
1942 Male, age 51, unknown 455.7
2410 Female, age 72, unknown 429.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1476.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1476.7
Samples: 183

Max nTPM: 3999.7
Min nTPM: 415.0
Std nTPM: 603.1
Median nTPM: 1368.7
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 3999.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 3852.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 3252.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 3206.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 3150.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 3078.9
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 2844.5
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 2794.9
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 2783.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2779.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 2648.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 365.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 365.2
FF:10158-103A5 76 years, female 365.2

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 185.0
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 185.0
Samples: 1

Max nTPM: 185.0
Min nTPM: 185.0
Sample A 185.0
Midbrain
nTPM: 143.5
Samples: 1

Max nTPM: 143.5
Min nTPM: 143.5
Sample A 143.5
Superior colliculi
nTPM: 106.3
Samples: 1

Max nTPM: 106.3
Min nTPM: 106.3
Sample A 106.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 389.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 389.4
Samples: 3

Max nTPM: 503.5
Min nTPM: 299.0
Sample A Female 503.5
Sample B Female 365.8
Sample C Male 299.0
Midbrain
nTPM: 290.2
Samples: 3

Max nTPM: 376.2
Min nTPM: 222.1
Sample B Female 376.2
Sample C Male 272.2
Sample D Male 222.1
Periaqueductal gray
nTPM: 283.1
Samples: 3

Max nTPM: 306.7
Min nTPM: 259.1
Sample B Female 306.7
Sample C Male 283.5
Sample D Male 259.1
Superior colliculi
nTPM: 333.5
Samples: 4

Max nTPM: 437.1
Min nTPM: 286.5
Sample A Female 437.1
Sample B Female 286.5
Sample C Male 305.3
Sample D Male 304.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 129.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 129.9
Samples: 4

Max nTPM: 143.6
Min nTPM: 111.8
Sample A 143.6
Sample B 111.8
Sample C 128.7
Sample D 135.5

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 2.8
Rat sample Sample description nTPM
Midbrain
nTPM: 2.8
Samples: 4

Max nTPM: 2.8
Min nTPM: 2.6
Sample A 2.8
Sample A 2.6
Sample A 2.8
Sample A 2.8

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