A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.5
nTPM
Monaco:
25.2
nTPM
Schmiedel:
60.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.5
HPA sample
nTPM
Memory B-cell nTPM: 2.5
Samples: 6
Max nTPM: 3.9
Min nTPM: 0.9
P10809_1017
3.9
P10809_1025
0.9
P10809_1044
3.6
P10809_1063
2.7
P10809_1092
1.5
P10809_1105
2.4
Naive B-cell nTPM: 2.0
Samples: 6
Max nTPM: 3.2
Min nTPM: 0.0
P10809_1011
2.5
P10809_1029
2.1
P10809_1048
0.0
P10809_1067
1.4
P10809_1091
3.2
P10809_1104
2.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 23.1
Samples: 4
Max nTPM: 35.9
Min nTPM: 7.9
RHH5310_R3677
15.2
RHH5218_R3590
7.9
RHH5247_R3619
35.9
RHH5276_R3648
33.5
Naive B-cell nTPM: 22.5
Samples: 4
Max nTPM: 27.8
Min nTPM: 20.2
RHH5308_R3675
20.2
RHH5216_R3588
20.3
RHH5245_R3617
27.8
RHH5274_R3646
21.9
Non-switched memory B-cell nTPM: 25.2
Samples: 4
Max nTPM: 41.1
Min nTPM: 9.3
RHH5309_R3676
15.3
RHH5217_R3589
41.1
RHH5246_R3618
35.2
RHH5275_R3647
9.3
Plasmablast nTPM: 19.5
Samples: 4
Max nTPM: 25.2
Min nTPM: 13.6
RHH5312_R3679
20.2
RHH5220_R3592
13.6
RHH5249_R3621
19.1
RHH5278_R3650
25.2
Switched memory B-cell nTPM: 24.5
Samples: 4
Max nTPM: 36.8
Min nTPM: 15.4
RHH5311_R3678
15.4
RHH5219_R3591
21.6
RHH5248_R3620
36.8
RHH5277_R3649
24.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
60.7
Schmiedel sample id
TPM
Naive B-cell TPM: 60.7
Samples: 91
Max TPM: 90.6
Min TPM: 21.8
B_CELL_NAIVE_1
90.6
B_CELL_NAIVE_2
90.3
B_CELL_NAIVE_3
89.8
B_CELL_NAIVE_4
87.9
B_CELL_NAIVE_5
86.7
B_CELL_NAIVE_6
86.4
B_CELL_NAIVE_7
85.4
B_CELL_NAIVE_8
84.3
B_CELL_NAIVE_9
83.9
B_CELL_NAIVE_10
81.1
B_CELL_NAIVE_11
80.0
B_CELL_NAIVE_12
79.8
B_CELL_NAIVE_13
77.8
B_CELL_NAIVE_14
77.7
B_CELL_NAIVE_15
74.2
B_CELL_NAIVE_16
73.4
B_CELL_NAIVE_17
73.4
B_CELL_NAIVE_18
73.2
B_CELL_NAIVE_19
72.8
B_CELL_NAIVE_20
71.9
B_CELL_NAIVE_21
71.4
B_CELL_NAIVE_22
70.0
B_CELL_NAIVE_23
69.6
B_CELL_NAIVE_24
69.5
B_CELL_NAIVE_25
68.5
B_CELL_NAIVE_26
68.1
B_CELL_NAIVE_27
68.0
B_CELL_NAIVE_28
67.6
B_CELL_NAIVE_29
67.2
B_CELL_NAIVE_30
67.1
B_CELL_NAIVE_31
67.1
B_CELL_NAIVE_32
66.9
B_CELL_NAIVE_33
66.1
B_CELL_NAIVE_34
65.6
B_CELL_NAIVE_35
65.6
B_CELL_NAIVE_36
65.3
B_CELL_NAIVE_37
65.3
B_CELL_NAIVE_38
65.3
B_CELL_NAIVE_39
64.1
B_CELL_NAIVE_40
64.0
B_CELL_NAIVE_41
63.4
B_CELL_NAIVE_42
63.0
B_CELL_NAIVE_43
61.2
B_CELL_NAIVE_44
60.6
B_CELL_NAIVE_45
59.7
B_CELL_NAIVE_46
59.4
B_CELL_NAIVE_47
59.4
B_CELL_NAIVE_48
59.0
B_CELL_NAIVE_49
58.6
B_CELL_NAIVE_50
58.6
B_CELL_NAIVE_51
58.6
B_CELL_NAIVE_52
58.4
B_CELL_NAIVE_53
57.3
B_CELL_NAIVE_54
57.1
B_CELL_NAIVE_55
56.6
B_CELL_NAIVE_56
56.6
B_CELL_NAIVE_57
56.3
B_CELL_NAIVE_58
56.2
B_CELL_NAIVE_59
55.7
B_CELL_NAIVE_60
53.2
B_CELL_NAIVE_61
53.0
B_CELL_NAIVE_62
52.1
B_CELL_NAIVE_63
51.6
B_CELL_NAIVE_64
51.5
B_CELL_NAIVE_65
51.5
B_CELL_NAIVE_66
50.8
B_CELL_NAIVE_67
50.7
B_CELL_NAIVE_68
50.2
B_CELL_NAIVE_69
50.1
B_CELL_NAIVE_70
50.0
B_CELL_NAIVE_71
49.2
B_CELL_NAIVE_72
49.0
B_CELL_NAIVE_73
48.9
B_CELL_NAIVE_74
46.2
B_CELL_NAIVE_75
46.1
B_CELL_NAIVE_76
45.7
B_CELL_NAIVE_77
45.0
B_CELL_NAIVE_78
44.3
B_CELL_NAIVE_79
44.1
B_CELL_NAIVE_80
44.0
B_CELL_NAIVE_81
43.9
B_CELL_NAIVE_82
43.6
B_CELL_NAIVE_83
43.2
B_CELL_NAIVE_84
42.0
B_CELL_NAIVE_85
41.0
B_CELL_NAIVE_86
40.5
B_CELL_NAIVE_87
40.0
B_CELL_NAIVE_88
38.1
B_CELL_NAIVE_89
36.3
B_CELL_NAIVE_90
23.6
B_CELL_NAIVE_91
21.8
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