A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.3
nTPM
Monaco:
23.1
nTPM
Schmiedel:
37.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.3
HPA sample
nTPM
Classical monocyte nTPM: 4.5
Samples: 6
Max nTPM: 7.2
Min nTPM: 2.5
P10809_1003
7.2
P10809_1020
5.6
P10809_1039
2.9
P10809_1058
3.4
P10809_1080
5.4
P10809_1107
2.5
Intermediate monocyte nTPM: 6.3
Samples: 6
Max nTPM: 13.9
Min nTPM: 3.5
P10809_1004
8.0
P10809_1023
3.5
P10809_1042
4.4
P10809_1061
13.9
P10809_1081
4.3
P10809_1108
3.9
Non-classical monocyte nTPM: 5.2
Samples: 5
Max nTPM: 11.9
Min nTPM: 2.2
P10809_1005
4.1
P10809_1053
4.9
P10809_1072
11.9
P10809_1082
3.1
P10809_1109
2.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.1
Monaco sample
nTPM
Classical monocyte nTPM: 23.1
Samples: 4
Max nTPM: 31.1
Min nTPM: 19.3
RHH5313_R3680
22.2
RHH5221_R3593
19.3
RHH5250_R3622
19.6
RHH5279_R3651
31.1
Intermediate monocyte nTPM: 17.5
Samples: 4
Max nTPM: 30.6
Min nTPM: 10.3
RHH5314_R3681
17.5
RHH5222_R3594
10.3
RHH5251_R3623
11.7
RHH5280_R3652
30.6
Non-classical monocyte nTPM: 20.3
Samples: 4
Max nTPM: 26.5
Min nTPM: 14.7
RHH5315_R3682
21.6
RHH5223_R3595
14.7
RHH5252_R3624
18.3
RHH5281_R3653
26.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.5
Schmiedel sample id
TPM
Classical monocyte TPM: 37.5
Samples: 91
Max TPM: 53.6
Min TPM: 23.7
MONOCYTES_1
53.6
MONOCYTES_2
52.8
MONOCYTES_3
51.5
MONOCYTES_4
50.0
MONOCYTES_5
49.4
MONOCYTES_6
49.4
MONOCYTES_7
48.2
MONOCYTES_8
46.7
MONOCYTES_9
45.3
MONOCYTES_10
45.2
MONOCYTES_11
44.8
MONOCYTES_12
44.3
MONOCYTES_13
43.8
MONOCYTES_14
43.3
MONOCYTES_15
42.9
MONOCYTES_16
42.8
MONOCYTES_17
42.7
MONOCYTES_18
42.2
MONOCYTES_19
41.7
MONOCYTES_20
41.6
MONOCYTES_21
41.3
MONOCYTES_22
41.3
MONOCYTES_23
40.9
MONOCYTES_24
40.8
MONOCYTES_25
40.7
MONOCYTES_26
40.4
MONOCYTES_27
40.2
MONOCYTES_28
40.2
MONOCYTES_29
39.9
MONOCYTES_30
39.8
MONOCYTES_31
39.8
MONOCYTES_32
39.7
MONOCYTES_33
39.6
MONOCYTES_34
39.4
MONOCYTES_35
39.2
MONOCYTES_36
39.2
MONOCYTES_37
39.1
MONOCYTES_38
39.0
MONOCYTES_39
38.9
MONOCYTES_40
38.7
MONOCYTES_41
38.6
MONOCYTES_42
38.6
MONOCYTES_43
38.1
MONOCYTES_44
38.0
MONOCYTES_45
37.8
MONOCYTES_46
37.6
MONOCYTES_47
37.4
MONOCYTES_48
37.4
MONOCYTES_49
37.3
MONOCYTES_50
37.3
MONOCYTES_51
37.3
MONOCYTES_52
37.1
MONOCYTES_53
37.0
MONOCYTES_54
36.4
MONOCYTES_55
36.3
MONOCYTES_56
35.2
MONOCYTES_57
35.2
MONOCYTES_58
35.1
MONOCYTES_59
34.8
MONOCYTES_60
34.7
MONOCYTES_61
34.6
MONOCYTES_62
34.3
MONOCYTES_63
34.3
MONOCYTES_64
34.3
MONOCYTES_65
34.2
MONOCYTES_66
34.0
MONOCYTES_67
34.0
MONOCYTES_68
33.4
MONOCYTES_69
32.9
MONOCYTES_70
32.6
MONOCYTES_71
32.2
MONOCYTES_72
31.8
MONOCYTES_73
31.7
MONOCYTES_74
31.3
MONOCYTES_75
31.0
MONOCYTES_76
31.0
MONOCYTES_77
30.7
MONOCYTES_78
30.1
MONOCYTES_79
30.0
MONOCYTES_80
29.8
MONOCYTES_81
29.6
MONOCYTES_82
29.3
MONOCYTES_83
29.1
MONOCYTES_84
28.8
MONOCYTES_85
28.8
MONOCYTES_86
28.5
MONOCYTES_87
28.5
MONOCYTES_88
28.0
MONOCYTES_89
27.6
MONOCYTES_90
27.6
MONOCYTES_91
23.7
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Non-classical monocyte TPM: 35.5
Samples: 90
Max TPM: 57.3
Min TPM: 22.4
M2_1
57.3
M2_2
51.9
M2_3
51.8
M2_4
50.5
M2_5
48.6
M2_6
48.0
M2_7
47.1
M2_8
45.6
M2_9
44.8
M2_10
44.1
M2_11
44.0
M2_12
43.7
M2_13
43.7
M2_14
43.6
M2_15
43.1
M2_16
41.8
M2_17
41.8
M2_18
41.8
M2_19
41.5
M2_20
41.1
M2_21
40.9
M2_22
40.3
M2_23
39.9
M2_24
39.8
M2_25
39.5
M2_26
39.3
M2_27
38.9
M2_28
38.7
M2_29
38.5
M2_30
38.4
M2_31
38.4
M2_32
37.9
M2_33
37.7
M2_34
37.5
M2_35
37.4
M2_36
37.1
M2_37
36.4
M2_38
36.1
M2_39
36.0
M2_40
35.7
M2_41
35.6
M2_42
35.5
M2_43
35.0
M2_44
34.9
M2_45
34.5
M2_46
34.4
M2_47
34.2
M2_48
34.1
M2_49
34.0
M2_50
33.9
M2_51
33.7
M2_52
33.3
M2_53
33.3
M2_54
33.3
M2_55
33.0
M2_56
33.0
M2_57
32.7
M2_58
32.6
M2_59
32.6
M2_60
32.3
M2_61
31.8
M2_62
31.7
M2_63
31.7
M2_64
31.2
M2_65
31.0
M2_66
31.0
M2_67
30.3
M2_68
30.2
M2_69
29.9
M2_70
29.9
M2_71
29.8
M2_72
29.7
M2_73
29.5
M2_74
27.7
M2_75
27.6
M2_76
27.5
M2_77
27.4
M2_78
27.2
M2_79
27.1
M2_80
26.6
M2_81
26.5
M2_82
26.5
M2_83
26.4
M2_84
25.8
M2_85
25.5
M2_86
24.9
M2_87
24.6
M2_88
23.6
M2_89
23.5
M2_90
22.4
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