We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Low
Inner nuclear layer:
High
Inner plexiform layer:
High
Limiting membrane:
Not detected
Nerve fiber layer:
High
Outer plexiform layer:
High
Photoreceptor cells:
Medium
Pigment epithelial cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
113.3
nTPM
GTEx:
113.3
nTPM
FANTOM5:
54.9
Scaled Tags Per Million
Pig:
41.2
nTPM
Mouse:
2235.8
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA015994
Pigment epithelial cells
Not detected
Photoreceptor cells
Medium
Limiting membrane
Not detected
Outer plexiform layer
High
Inner nuclear layer
High
Inner plexiform layer
High
Ganglion cells
Low
Nerve fiber layer
High
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA070835
Pigment epithelial cells
Not detected
Photoreceptor cells
Medium
Limiting membrane
Not detected
Outer plexiform layer
High
Inner nuclear layer
Medium
Inner plexiform layer
High
Ganglion cells
Medium
Nerve fiber layer
High
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
113.3
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 113.3
Samples: 105
Max nTPM: 188.3
Min nTPM: 53.7
Std nTPM: 26.6
Median nTPM: 0.0
4_1
88 years, female
188.3
501_1
88 years, male
185.9
506_1
65 years, male
181.6
42_1
85 years, male
174.8
18_1
88 years, male
166.8
120_1
70 years, female
164.5
137_1
83 years, male
162.3
99_1
64 years, male
153.3
379_1
60 years, male
152.8
452_1
88 years, female
152.0
17_1
71 years, male
151.2
315_1
62 years, female
150.0
288_1
66 years, female
149.5
119_1
70 years, female
148.3
115_1
83 years, male
148.0
142_1
61 years, female
147.3
109_1
81 years, female
141.4
503_1
68 years, male
138.1
145_1
84 years, male
136.6
173_1
67 years, male
136.4
35_1
74 years, female
135.5
314_1
67 years, male
135.3
117_1
61 years, male
131.8
356_1
87 years, female
129.7
149_1
88 years, male
128.0
89_1
63 years, male
127.2
376_1
75 years, female
126.9
162_1
79 years, female
123.8
375_1
74 years, female
122.8
6_1
73 years, female
120.8
32_1
67 years, male
120.8
351_1
91 years, male
120.7
243_1
75 years, male
120.5
126_1
63 years, male
119.9
295_1
61 years, female
119.7
347_1
72 years, male
119.7
468_1
89 years, male
118.9
217_1
76 years, male
118.0
518_1
75 years, female
117.5
153_1
70 years, female
117.4
81_1
67 years, male
117.3
43_1
64 years, female
117.1
264_1
73 years, female
116.7
499_1
55 years, female
115.7
377_1
82 years, female
115.1
406_1
79 years, male
115.0
316_1
62 years, male
114.4
386_1
76 years, male
113.5
517_1
88 years, male
113.3
291_1
76 years, male
113.1
491_1
89 years, female
113.1
189_1
76 years, male
112.7
348_1
84 years, male
111.3
313_1
79 years, female
111.0
237_1
82 years, male
110.0
526_1
61 years, male
108.8
349_1
83 years, male
108.2
396_1
62 years, male
106.8
254_1
77 years, female
104.9
265_1
87 years, male
104.6
335_1
73 years, female
103.8
394_1
75 years, female
103.4
9_1
66 years, female
102.8
177_1
74 years, male
101.5
413_1
59 years, female
101.0
354_1
81 years, female
100.9
324_1
76 years, male
100.6
384_1
83 years, male
100.1
353_1
82 years, female
100.0
320_1
89 years, female
99.4
292_1
71 years, male
99.1
490_1
67 years, female
98.6
319_1
81 years, male
98.4
139_1
64 years, female
98.0
389_1
86 years, female
97.0
172_1
72 years, female
96.5
41_1
94 years, female
95.4
447_1
81 years, male
94.7
163_1
78 years, male
93.4
317_1
60 years, male
93.0
404_1
82 years, female
92.9
266_1
85 years, male
92.8
425_1
59 years, female
92.7
414_1
84 years, female
92.3
415_1
77 years, female
92.1
251_1
78 years, male
90.9
2_1
77 years, female
90.4
322_1
76 years, male
89.8
246_1
77 years, male
89.5
286_1
68 years, female
89.0
318_1
68 years, male
88.0
466_1
57 years, female
87.8
218_1
71 years, female
84.5
480_1
63 years, male
84.5
321_1
62 years, female
81.4
355_1
70 years, female
79.9
350_1
84 years, female
79.3
352_1
62 years, male
78.4
311_1
78 years, male
77.9
229_1
69 years, female
75.5
405_1
91 years, male
75.3
293_1
68 years, female
74.2
307_1
66 years, female
70.2
308_1
70 years, female
69.8
495_1
57 years, female
53.7
Show allShow less
RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.