MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.9 nTPM
HPA Brain:32.0 nTPM
GTEx:7.9 nTPM
FANTOM5:22.0 Scaled Tags Per Million
Pig:19.3 nTPM
Mouse:17.2 nTPM
Allen mouse:2.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 32.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.7
1833 Male, age 53, unknown 30.5
1830 Male, age 51, unknown 29.5
1870 Female, age 42, unknown 29.5
2411 Female, age 72, unknown 27.3
2666 Male, age 74, left hemisphere 21.6
2219 Male, age 76, both hemispheres 19.0
2828 Female, age 72, unknown 19.0
2019 Male, age 18, unknown 18.7
1827 Male, age 72, unknown 18.0
2586 Male, age 75, left hemisphere 13.8
Dorsal raphe nucleus
nTPM: 19.5
2016 Female, age 72, unknown 24.4
2750 Male, age 76, both hemispheres 20.8
1828 Male, age 53, unknown 18.9
2047 Male, age 72, unknown 18.8
2298 Female, age 72, unknown 14.9
Inferior colliculus
nTPM: 25.8
1848 Female, age 42, unknown 28.5
2849 Male, age 72, unknown 27.7
1890 Male, age 53, unknown 24.7
2097 Female, age 72, unknown 22.4
Median raphe nucleus
nTPM: 29.6
2220 Male, age 76, midline 29.6
Periaquaductal grey, anterior
nTPM: 31.4
1947 Male, age 18, unknown 45.5
2502 Female, age 75, unknown 32.9
1795 Male, age 51, unknown 15.7
Periaquaductal grey, dorsal
nTPM: 24.9
1831 Male, age 72, unknown 32.3
1840 Male, age 53, unknown 24.9
2464 Female, age 72, unknown 21.5
2850 Male, age 76, both hemispheres 20.9
Periaquaductal grey, lateral
nTPM: 21.1
2140 Male, age 76, both hemispheres 24.7
2053 Male, age 18, unknown 19.7
2272 Male, age 74, both hemispheres 18.9
Pretectal area
nTPM: 18.7
2316 Male, age 76, right hemisphere 26.5
2825 Male, age 18, unknown 26.0
2224 Female, age 72, unknown 25.6
2407 Male, age 75, both hemispheres 24.1
2667 Female, age 75, unknown 19.6
2273 Male, age 74, both hemispheres 19.5
1815 Male, age 53, unknown 14.5
1817 Female, age 42, unknown 12.9
1816 Male, age 51, unknown 12.8
1944 Female, age 72, unknown 12.3
2007 Male, age 72, unknown 11.4
Red nucleus
nTPM: 25.0
1821 Female, age 72, unknown 31.0
1954 Female, age 42, unknown 27.7
1865 Male, age 51, unknown 27.5
2227 Male, age 72, unknown 27.1
2769 Male, age 72, unknown 26.8
2588 Male, age 74, left hemisphere 26.4
2823 Male, age 76, right hemisphere 24.5
1904 Male, age 53, unknown 23.4
2503 Female, age 72, unknown 23.0
2584 Male, age 75, left hemisphere 21.8
2725 Female, age 75, unknown 21.7
2785 Male, age 18, unknown 18.5
Substantia nigra
nTPM: 27.0
2241 Male, age 72, unknown 36.9
1916 Female, age 42, unknown 35.4
1851 Male, age 51, unknown 32.6
2699 Male, age 18, unknown 31.7
1941 Male, age 53, unknown 27.5
2409 Female, age 72, unknown 26.0
1889 Female, age 72, unknown 22.1
2590 Female, age 75, unknown 20.0
2665 Male, age 74, both hemispheres 19.0
2583 Male, age 75, right hemisphere 18.4
Superior colliculus
nTPM: 20.8
2587 Male, age 74, left hemisphere 28.9
1839 Male, age 51, unknown 28.4
1895 Male, age 76, right hemisphere 26.0
2668 Female, age 75, unknown 23.7
1913 Female, age 42, unknown 21.9
1796 Male, age 53, unknown 19.2
2664 Male, age 75, both hemispheres 16.4
1995 Male, age 72, unknown 16.2
2087 Female, age 72, unknown 15.3
2261 Male, age 18, unknown 11.7
Ventral tegmental area
nTPM: 32.0
2223 Female, age 72, unknown 39.0
1915 Female, age 42, unknown 34.4
2218 Male, age 76, both hemispheres 31.9
2021 Male, age 53, unknown 30.5
1942 Male, age 51, unknown 30.3
2410 Female, age 72, unknown 26.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 7.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.9
Samples: 183

Max nTPM: 34.2
Min nTPM: 1.6
Std nTPM: 4.4
Median nTPM: 7.1
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 34.2
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 29.3
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 24.5
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 23.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 23.3
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 19.0
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 18.6
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 16.7
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 15.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 14.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 14.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 22.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.0
FF:10158-103A5 76 years, female 22.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 19.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 14.1
Samples: 4

Max nTPM: 17.4
Min nTPM: 6.9
Sample A Female 17.4
Sample B Female 14.9
Sample C Male 17.0
Sample D Male 6.9
Midbrain
nTPM: 15.1
Samples: 4

Max nTPM: 19.7
Min nTPM: 8.7
Sample A Female 8.7
Sample B Female 14.2
Sample C Male 19.7
Sample D Male 17.9
Periaqueductal gray
nTPM: 14.8
Samples: 3

Max nTPM: 17.9
Min nTPM: 12.6
Sample B Female 12.6
Sample C Male 17.9
Sample D Male 14.0
Superior colliculi
nTPM: 19.3
Samples: 4

Max nTPM: 22.2
Min nTPM: 16.3
Sample A Female 19.5
Sample B Female 16.3
Sample C Male 22.2
Sample D Male 19.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 17.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.2
Samples: 4

Max nTPM: 18.9
Min nTPM: 16.3
Sample A Male 16.3
Sample B Male 18.9
Sample C Female 16.5
Sample D Female 17.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
69976478 Antisense, RP_050512_03_H12, Mouse strain C57BL/6J (56 days, male) 4.4
73520979 Antisense, RP_051017_04_F07, Mouse strain C57BL/6J (56 days, male) 0.1

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