A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
65.2
nTPM
Monaco:
116.1
nTPM
Schmiedel:
87.7
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
65.2
HPA sample
nTPM
NK-cell nTPM: 65.2
Samples: 6
Max nTPM: 114.9
Min nTPM: 41.9
P10809_1013
49.5
P10809_1033
114.9
P10809_1052
54.8
P10809_1071
63.2
P10809_1093
41.9
P10809_1103
66.8
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
116.1
Monaco sample
nTPM
NK-cell nTPM: 116.1
Samples: 4
Max nTPM: 178.8
Min nTPM: 81.4
RHH5316_R3683
100.4
RHH5224_R3596
178.8
RHH5253_R3625
103.6
RHH5282_R3654
81.4
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
87.7
Schmiedel sample id
TPM
NK-cell TPM: 87.7
Samples: 90
Max TPM: 140.8
Min TPM: 57.0
NK_1
140.8
NK_2
127.5
NK_3
125.0
NK_4
117.2
NK_5
115.0
NK_6
114.1
NK_7
113.4
NK_8
112.6
NK_9
111.2
NK_10
105.9
NK_11
105.2
NK_12
104.5
NK_13
103.9
NK_14
103.6
NK_15
103.1
NK_16
102.9
NK_17
102.8
NK_18
102.7
NK_19
102.3
NK_20
101.9
NK_21
101.8
NK_22
101.7
NK_23
100.3
NK_24
99.5
NK_25
98.4
NK_26
98.1
NK_27
97.6
NK_28
97.5
NK_29
97.0
NK_30
96.8
NK_31
96.7
NK_32
96.6
NK_33
95.0
NK_34
94.8
NK_35
94.6
NK_36
94.4
NK_37
94.2
NK_38
94.0
NK_39
92.5
NK_40
92.0
NK_41
91.3
NK_42
88.7
NK_43
87.2
NK_44
86.0
NK_45
85.8
NK_46
85.1
NK_47
85.1
NK_48
83.6
NK_49
83.2
NK_50
82.9
NK_51
82.6
NK_52
82.2
NK_53
80.7
NK_54
80.2
NK_55
80.2
NK_56
79.9
NK_57
79.9
NK_58
79.5
NK_59
78.5
NK_60
77.8
NK_61
77.4
NK_62
77.3
NK_63
76.8
NK_64
75.5
NK_65
75.5
NK_66
75.0
NK_67
74.9
NK_68
74.0
NK_69
73.5
NK_70
73.5
NK_71
73.1
NK_72
71.2
NK_73
71.0
NK_74
70.9
NK_75
70.5
NK_76
70.4
NK_77
70.1
NK_78
69.8
NK_79
69.8
NK_80
69.7
NK_81
69.4
NK_82
68.8
NK_83
64.0
NK_84
63.5
NK_85
63.0
NK_86
59.3
NK_87
59.0
NK_88
58.6
NK_89
58.2
NK_90
57.0
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