A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
22.5
nTPM
Monaco:
36.3
nTPM
Schmiedel:
19.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.5
HPA sample
nTPM
Classical monocyte nTPM: 13.2
Samples: 6
Max nTPM: 17.1
Min nTPM: 9.0
P10809_1003
14.8
P10809_1020
17.1
P10809_1039
12.5
P10809_1058
9.0
P10809_1080
12.6
P10809_1107
13.1
Intermediate monocyte nTPM: 17.8
Samples: 6
Max nTPM: 21.7
Min nTPM: 12.5
P10809_1004
16.0
P10809_1023
18.5
P10809_1042
21.7
P10809_1061
21.3
P10809_1081
12.5
P10809_1108
16.5
Non-classical monocyte nTPM: 22.5
Samples: 5
Max nTPM: 31.4
Min nTPM: 15.2
P10809_1005
20.0
P10809_1053
26.0
P10809_1072
31.4
P10809_1082
15.2
P10809_1109
19.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
36.3
Monaco sample
nTPM
Classical monocyte nTPM: 34.9
Samples: 4
Max nTPM: 42.0
Min nTPM: 28.3
RHH5313_R3680
28.3
RHH5221_R3593
42.0
RHH5250_R3622
33.0
RHH5279_R3651
36.4
Intermediate monocyte nTPM: 33.1
Samples: 4
Max nTPM: 35.7
Min nTPM: 28.7
RHH5314_R3681
35.7
RHH5222_R3594
33.4
RHH5251_R3623
28.7
RHH5280_R3652
34.7
Non-classical monocyte nTPM: 36.3
Samples: 4
Max nTPM: 40.9
Min nTPM: 33.4
RHH5315_R3682
34.2
RHH5223_R3595
33.4
RHH5252_R3624
40.9
RHH5281_R3653
36.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
19.1
Schmiedel sample id
TPM
Classical monocyte TPM: 15.0
Samples: 91
Max TPM: 19.6
Min TPM: 12.7
MONOCYTES_1
19.6
MONOCYTES_2
18.8
MONOCYTES_3
17.5
MONOCYTES_4
17.5
MONOCYTES_5
17.4
MONOCYTES_6
16.9
MONOCYTES_7
16.9
MONOCYTES_8
16.8
MONOCYTES_9
16.7
MONOCYTES_10
16.7
MONOCYTES_11
16.5
MONOCYTES_12
16.5
MONOCYTES_13
16.4
MONOCYTES_14
16.4
MONOCYTES_15
16.2
MONOCYTES_16
16.1
MONOCYTES_17
16.1
MONOCYTES_18
16.1
MONOCYTES_19
16.0
MONOCYTES_20
16.0
MONOCYTES_21
16.0
MONOCYTES_22
16.0
MONOCYTES_23
15.9
MONOCYTES_24
15.9
MONOCYTES_25
15.9
MONOCYTES_26
15.9
MONOCYTES_27
15.8
MONOCYTES_28
15.8
MONOCYTES_29
15.8
MONOCYTES_30
15.8
MONOCYTES_31
15.8
MONOCYTES_32
15.8
MONOCYTES_33
15.7
MONOCYTES_34
15.6
MONOCYTES_35
15.5
MONOCYTES_36
15.4
MONOCYTES_37
15.4
MONOCYTES_38
15.4
MONOCYTES_39
15.4
MONOCYTES_40
15.3
MONOCYTES_41
15.3
MONOCYTES_42
15.2
MONOCYTES_43
15.2
MONOCYTES_44
15.1
MONOCYTES_45
15.1
MONOCYTES_46
15.0
MONOCYTES_47
14.8
MONOCYTES_48
14.8
MONOCYTES_49
14.8
MONOCYTES_50
14.6
MONOCYTES_51
14.6
MONOCYTES_52
14.6
MONOCYTES_53
14.5
MONOCYTES_54
14.5
MONOCYTES_55
14.4
MONOCYTES_56
14.4
MONOCYTES_57
14.3
MONOCYTES_58
14.3
MONOCYTES_59
14.3
MONOCYTES_60
14.3
MONOCYTES_61
14.2
MONOCYTES_62
14.2
MONOCYTES_63
14.2
MONOCYTES_64
14.1
MONOCYTES_65
14.1
MONOCYTES_66
14.1
MONOCYTES_67
14.1
MONOCYTES_68
14.0
MONOCYTES_69
14.0
MONOCYTES_70
13.9
MONOCYTES_71
13.9
MONOCYTES_72
13.9
MONOCYTES_73
13.9
MONOCYTES_74
13.9
MONOCYTES_75
13.8
MONOCYTES_76
13.8
MONOCYTES_77
13.8
MONOCYTES_78
13.7
MONOCYTES_79
13.6
MONOCYTES_80
13.6
MONOCYTES_81
13.5
MONOCYTES_82
13.5
MONOCYTES_83
13.2
MONOCYTES_84
13.2
MONOCYTES_85
13.2
MONOCYTES_86
13.1
MONOCYTES_87
13.1
MONOCYTES_88
13.0
MONOCYTES_89
13.0
MONOCYTES_90
12.8
MONOCYTES_91
12.7
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Non-classical monocyte TPM: 19.1
Samples: 90
Max TPM: 24.6
Min TPM: 13.9
M2_1
24.6
M2_2
23.6
M2_3
22.5
M2_4
22.3
M2_5
22.2
M2_6
22.0
M2_7
21.9
M2_8
21.8
M2_9
21.5
M2_10
21.4
M2_11
21.2
M2_12
21.2
M2_13
20.9
M2_14
20.9
M2_15
20.8
M2_16
20.7
M2_17
20.6
M2_18
20.6
M2_19
20.6
M2_20
20.4
M2_21
20.4
M2_22
20.3
M2_23
20.3
M2_24
20.3
M2_25
20.1
M2_26
20.1
M2_27
20.0
M2_28
20.0
M2_29
19.9
M2_30
19.8
M2_31
19.8
M2_32
19.7
M2_33
19.7
M2_34
19.6
M2_35
19.4
M2_36
19.4
M2_37
19.3
M2_38
19.3
M2_39
19.2
M2_40
19.1
M2_41
19.1
M2_42
19.1
M2_43
19.1
M2_44
19.1
M2_45
19.0
M2_46
19.0
M2_47
18.8
M2_48
18.8
M2_49
18.8
M2_50
18.8
M2_51
18.7
M2_52
18.7
M2_53
18.7
M2_54
18.7
M2_55
18.6
M2_56
18.6
M2_57
18.6
M2_58
18.5
M2_59
18.5
M2_60
18.4
M2_61
18.4
M2_62
18.4
M2_63
18.4
M2_64
18.3
M2_65
18.3
M2_66
18.2
M2_67
18.0
M2_68
18.0
M2_69
18.0
M2_70
17.9
M2_71
17.9
M2_72
17.7
M2_73
17.7
M2_74
17.6
M2_75
17.5
M2_76
17.5
M2_77
17.4
M2_78
17.3
M2_79
17.2
M2_80
17.2
M2_81
17.2
M2_82
17.1
M2_83
16.7
M2_84
16.7
M2_85
16.6
M2_86
16.6
M2_87
16.1
M2_88
15.9
M2_89
15.6
M2_90
13.9
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