MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.4 nTPM
HPA Brain:52.7 nTPM
GTEx:29.4 nTPM
FANTOM5:59.8 Scaled Tags Per Million
Pig:12.8 nTPM
Mouse:20.7 nTPM
Allen mouse:0.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 52.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.8
2586 Male, age 75, left hemisphere 66.0
2666 Male, age 74, left hemisphere 61.0
2019 Male, age 18, unknown 55.9
1827 Male, age 72, unknown 51.0
2828 Female, age 72, unknown 44.5
2411 Female, age 72, unknown 43.4
2219 Male, age 76, both hemispheres 43.0
1870 Female, age 42, unknown 38.9
1830 Male, age 51, unknown 38.1
1833 Male, age 53, unknown 36.0
Dorsal raphe nucleus
nTPM: 34.5
2298 Female, age 72, unknown 42.2
2750 Male, age 76, both hemispheres 40.0
2047 Male, age 72, unknown 34.4
1828 Male, age 53, unknown 28.3
2016 Female, age 72, unknown 27.5
Inferior colliculus
nTPM: 40.7
2097 Female, age 72, unknown 45.2
1890 Male, age 53, unknown 44.8
1848 Female, age 42, unknown 40.3
2849 Male, age 72, unknown 32.7
Median raphe nucleus
nTPM: 40.0
2220 Male, age 76, midline 40.0
Periaquaductal grey, anterior
nTPM: 43.5
1795 Male, age 51, unknown 50.1
2502 Female, age 75, unknown 40.7
1947 Male, age 18, unknown 39.6
Periaquaductal grey, dorsal
nTPM: 32.1
1831 Male, age 72, unknown 36.8
1840 Male, age 53, unknown 35.0
2464 Female, age 72, unknown 32.5
2850 Male, age 76, both hemispheres 24.1
Periaquaductal grey, lateral
nTPM: 34.3
2053 Male, age 18, unknown 41.4
2140 Male, age 76, both hemispheres 31.9
2272 Male, age 74, both hemispheres 29.7
Pretectal area
nTPM: 52.7
1816 Male, age 51, unknown 92.9
2007 Male, age 72, unknown 76.2
1944 Female, age 72, unknown 70.3
1815 Male, age 53, unknown 65.8
1817 Female, age 42, unknown 60.2
2407 Male, age 75, both hemispheres 44.2
2224 Female, age 72, unknown 40.0
2667 Female, age 75, unknown 37.3
2316 Male, age 76, right hemisphere 35.5
2825 Male, age 18, unknown 34.2
2273 Male, age 74, both hemispheres 23.5
Red nucleus
nTPM: 44.6
2785 Male, age 18, unknown 58.2
2584 Male, age 75, left hemisphere 51.0
2823 Male, age 76, right hemisphere 47.9
2725 Female, age 75, unknown 47.7
1954 Female, age 42, unknown 46.7
2588 Male, age 74, left hemisphere 46.4
1904 Male, age 53, unknown 42.1
2769 Male, age 72, unknown 41.0
2503 Female, age 72, unknown 40.2
1865 Male, age 51, unknown 38.9
1821 Female, age 72, unknown 38.1
2227 Male, age 72, unknown 36.8
Substantia nigra
nTPM: 45.6
1916 Female, age 42, unknown 55.1
2583 Male, age 75, right hemisphere 55.1
1889 Female, age 72, unknown 54.3
2590 Female, age 75, unknown 49.4
1851 Male, age 51, unknown 47.7
2665 Male, age 74, both hemispheres 46.4
2409 Female, age 72, unknown 40.2
1941 Male, age 53, unknown 39.4
2241 Male, age 72, unknown 37.6
2699 Male, age 18, unknown 31.3
Superior colliculus
nTPM: 46.6
2087 Female, age 72, unknown 70.1
2668 Female, age 75, unknown 53.5
2261 Male, age 18, unknown 53.2
1796 Male, age 53, unknown 50.2
1913 Female, age 42, unknown 47.7
1995 Male, age 72, unknown 43.6
2664 Male, age 75, both hemispheres 41.0
1895 Male, age 76, right hemisphere 38.7
1839 Male, age 51, unknown 36.2
2587 Male, age 74, left hemisphere 32.2
Ventral tegmental area
nTPM: 41.8
2410 Female, age 72, unknown 57.4
2218 Male, age 76, both hemispheres 46.1
2021 Male, age 53, unknown 42.1
2223 Female, age 72, unknown 37.5
1915 Female, age 42, unknown 37.0
1942 Male, age 51, unknown 30.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 29.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.4
Samples: 183

Max nTPM: 61.2
Min nTPM: 8.4
Std nTPM: 8.6
Median nTPM: 28.3
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 61.2
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 56.4
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 54.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 53.9
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 51.3
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 50.5
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 49.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 49.3
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 47.6
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 47.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 45.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 59.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 59.8
FF:10158-103A5 76 years, female 59.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 12.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.0
Samples: 4

Max nTPM: 11.9
Min nTPM: 6.0
Sample A Female 11.9
Sample B Female 7.6
Sample C Male 10.3
Sample D Male 6.0
Midbrain
nTPM: 10.7
Samples: 4

Max nTPM: 18.8
Min nTPM: 6.0
Sample A Female 6.0
Sample B Female 7.0
Sample C Male 18.8
Sample D Male 10.9
Periaqueductal gray
nTPM: 9.3
Samples: 3

Max nTPM: 12.4
Min nTPM: 7.6
Sample B Female 7.8
Sample C Male 12.4
Sample D Male 7.6
Superior colliculi
nTPM: 12.8
Samples: 4

Max nTPM: 16.8
Min nTPM: 9.5
Sample A Female 12.8
Sample B Female 9.5
Sample C Male 16.8
Sample D Male 12.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 20.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.7
Samples: 4

Max nTPM: 22.3
Min nTPM: 18.7
Sample A Male 18.7
Sample B Male 21.1
Sample C Female 22.3
Sample D Female 20.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
76 Antisense, RP_Baylor_103319, Mouse strain C57BL/6J (56 days, male) 0.6
75 Antisense, RP_Baylor_103319, Mouse strain C57BL/6J (56 days, male) 0.4

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