MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:78.7 nTPM
HPA Brain:95.7 nTPM
GTEx:78.7 nTPM
FANTOM5:143.6 Scaled Tags Per Million
Pig:111.9 nTPM
Mouse:98.4 nTPM
Allen mouse:15.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 95.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 79.0
2219 Male, age 76, both hemispheres 97.4
1870 Female, age 42, unknown 87.0
1833 Male, age 53, unknown 85.1
1830 Male, age 51, unknown 82.4
2666 Male, age 74, left hemisphere 81.9
1827 Male, age 72, unknown 79.1
2411 Female, age 72, unknown 73.1
2019 Male, age 18, unknown 71.0
2828 Female, age 72, unknown 69.0
2586 Male, age 75, left hemisphere 64.5
Dorsal raphe nucleus
nTPM: 72.5
1828 Male, age 53, unknown 83.0
2047 Male, age 72, unknown 73.8
2750 Male, age 76, both hemispheres 73.2
2016 Female, age 72, unknown 71.2
2298 Female, age 72, unknown 61.2
Inferior colliculus
nTPM: 93.4
2849 Male, age 72, unknown 111.9
1890 Male, age 53, unknown 91.7
1848 Female, age 42, unknown 87.2
2097 Female, age 72, unknown 82.7
Median raphe nucleus
nTPM: 95.7
2220 Male, age 76, midline 95.7
Periaquaductal grey, anterior
nTPM: 76.5
1947 Male, age 18, unknown 80.6
2502 Female, age 75, unknown 74.8
1795 Male, age 51, unknown 74.2
Periaquaductal grey, dorsal
nTPM: 91.0
2850 Male, age 76, both hemispheres 114.1
1840 Male, age 53, unknown 93.6
1831 Male, age 72, unknown 80.0
2464 Female, age 72, unknown 76.6
Periaquaductal grey, lateral
nTPM: 83.7
2140 Male, age 76, both hemispheres 99.1
2053 Male, age 18, unknown 82.7
2272 Male, age 74, both hemispheres 69.5
Pretectal area
nTPM: 85.1
1944 Female, age 72, unknown 94.3
1817 Female, age 42, unknown 93.8
2667 Female, age 75, unknown 91.8
2825 Male, age 18, unknown 91.3
1816 Male, age 51, unknown 89.6
2407 Male, age 75, both hemispheres 82.3
1815 Male, age 53, unknown 82.1
2224 Female, age 72, unknown 81.4
2316 Male, age 76, right hemisphere 79.3
2007 Male, age 72, unknown 77.2
2273 Male, age 74, both hemispheres 73.0
Red nucleus
nTPM: 82.0
2725 Female, age 75, unknown 96.0
2503 Female, age 72, unknown 93.2
2823 Male, age 76, right hemisphere 86.5
2588 Male, age 74, left hemisphere 85.9
1821 Female, age 72, unknown 82.8
2584 Male, age 75, left hemisphere 82.7
1865 Male, age 51, unknown 81.9
2227 Male, age 72, unknown 78.6
1954 Female, age 42, unknown 76.5
2769 Male, age 72, unknown 75.5
1904 Male, age 53, unknown 72.3
2785 Male, age 18, unknown 71.8
Substantia nigra
nTPM: 90.4
2699 Male, age 18, unknown 103.1
2665 Male, age 74, both hemispheres 101.6
2241 Male, age 72, unknown 100.7
1916 Female, age 42, unknown 99.4
2409 Female, age 72, unknown 90.1
1889 Female, age 72, unknown 89.0
1941 Male, age 53, unknown 87.4
1851 Male, age 51, unknown 83.8
2590 Female, age 75, unknown 79.4
2583 Male, age 75, right hemisphere 69.1
Superior colliculus
nTPM: 79.1
1895 Male, age 76, right hemisphere 84.8
2087 Female, age 72, unknown 84.4
1839 Male, age 51, unknown 82.8
2587 Male, age 74, left hemisphere 81.5
1913 Female, age 42, unknown 79.4
1995 Male, age 72, unknown 78.6
2261 Male, age 18, unknown 76.4
2664 Male, age 75, both hemispheres 76.0
1796 Male, age 53, unknown 75.3
2668 Female, age 75, unknown 71.8
Ventral tegmental area
nTPM: 82.2
2218 Male, age 76, both hemispheres 92.0
2223 Female, age 72, unknown 85.2
1915 Female, age 42, unknown 80.7
2021 Male, age 53, unknown 80.2
1942 Male, age 51, unknown 77.7
2410 Female, age 72, unknown 77.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 78.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 78.7
Samples: 183

Max nTPM: 123.4
Min nTPM: 43.0
Std nTPM: 13.6
Median nTPM: 77.8
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 123.4
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 115.4
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 113.2
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 108.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 107.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 105.5
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 105.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 104.6
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 104.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 103.6
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 100.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 143.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 143.6
FF:10158-103A5 76 years, female 143.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 111.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 105.7
Samples: 4

Max nTPM: 126.6
Min nTPM: 94.5
Sample A Female 106.0
Sample B Female 95.7
Sample C Male 126.6
Sample D Male 94.5
Midbrain
nTPM: 111.9
Samples: 4

Max nTPM: 118.8
Min nTPM: 104.6
Sample A Female 118.8
Sample B Female 112.9
Sample C Male 111.1
Sample D Male 104.6
Periaqueductal gray
nTPM: 108.7
Samples: 3

Max nTPM: 125.7
Min nTPM: 93.7
Sample B Female 106.7
Sample C Male 125.7
Sample D Male 93.7
Superior colliculi
nTPM: 107.6
Samples: 4

Max nTPM: 118.0
Min nTPM: 85.1
Sample A Female 110.8
Sample B Female 85.1
Sample C Male 118.0
Sample D Male 116.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 98.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 98.4
Samples: 4

Max nTPM: 101.0
Min nTPM: 96.1
Sample A Male 101.0
Sample B Male 96.1
Sample C Female 99.3
Sample D Female 97.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 15.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.3
68301939 Antisense, RP_041130_02_B02, Mouse strain C57BL/6J (56 days, male) 15.3

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