A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
12.4
nTPM
Monaco:
64.9
nTPM
Schmiedel:
72.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.4
HPA sample
nTPM
Memory B-cell nTPM: 9.7
Samples: 6
Max nTPM: 11.3
Min nTPM: 7.4
P10809_1017
9.3
P10809_1025
7.4
P10809_1044
10.2
P10809_1063
9.8
P10809_1092
10.0
P10809_1105
11.3
Naive B-cell nTPM: 12.4
Samples: 6
Max nTPM: 18.6
Min nTPM: 7.0
P10809_1011
11.2
P10809_1029
7.2
P10809_1048
7.0
P10809_1067
18.6
P10809_1091
14.1
P10809_1104
16.2
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
64.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 32.9
Samples: 4
Max nTPM: 58.6
Min nTPM: 14.2
RHH5310_R3677
14.2
RHH5218_R3590
58.6
RHH5247_R3619
30.9
RHH5276_R3648
27.8
Naive B-cell nTPM: 64.9
Samples: 4
Max nTPM: 85.3
Min nTPM: 44.3
RHH5308_R3675
44.3
RHH5216_R3588
85.3
RHH5245_R3617
75.2
RHH5274_R3646
54.9
Non-switched memory B-cell nTPM: 53.2
Samples: 4
Max nTPM: 64.9
Min nTPM: 41.2
RHH5309_R3676
41.2
RHH5217_R3589
64.9
RHH5246_R3618
62.1
RHH5275_R3647
44.4
Plasmablast nTPM: 6.7
Samples: 4
Max nTPM: 9.5
Min nTPM: 4.9
RHH5312_R3679
9.5
RHH5220_R3592
6.2
RHH5249_R3621
4.9
RHH5278_R3650
6.0
Switched memory B-cell nTPM: 29.1
Samples: 4
Max nTPM: 37.1
Min nTPM: 19.0
RHH5311_R3678
19.0
RHH5219_R3591
33.8
RHH5248_R3620
37.1
RHH5277_R3649
26.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
72.0
Schmiedel sample id
TPM
Naive B-cell TPM: 72.0
Samples: 91
Max TPM: 171.6
Min TPM: 33.6
B_CELL_NAIVE_1
171.6
B_CELL_NAIVE_2
119.9
B_CELL_NAIVE_3
119.5
B_CELL_NAIVE_4
118.3
B_CELL_NAIVE_5
115.4
B_CELL_NAIVE_6
112.1
B_CELL_NAIVE_7
111.8
B_CELL_NAIVE_8
104.8
B_CELL_NAIVE_9
104.3
B_CELL_NAIVE_10
100.0
B_CELL_NAIVE_11
98.8
B_CELL_NAIVE_12
93.9
B_CELL_NAIVE_13
91.2
B_CELL_NAIVE_14
88.0
B_CELL_NAIVE_15
85.1
B_CELL_NAIVE_16
84.8
B_CELL_NAIVE_17
84.4
B_CELL_NAIVE_18
83.8
B_CELL_NAIVE_19
82.5
B_CELL_NAIVE_20
82.3
B_CELL_NAIVE_21
80.8
B_CELL_NAIVE_22
80.7
B_CELL_NAIVE_23
79.8
B_CELL_NAIVE_24
79.8
B_CELL_NAIVE_25
78.3
B_CELL_NAIVE_26
77.3
B_CELL_NAIVE_27
76.4
B_CELL_NAIVE_28
76.4
B_CELL_NAIVE_29
75.8
B_CELL_NAIVE_30
74.3
B_CELL_NAIVE_31
73.8
B_CELL_NAIVE_32
73.3
B_CELL_NAIVE_33
73.3
B_CELL_NAIVE_34
73.1
B_CELL_NAIVE_35
73.0
B_CELL_NAIVE_36
72.9
B_CELL_NAIVE_37
72.7
B_CELL_NAIVE_38
71.4
B_CELL_NAIVE_39
71.4
B_CELL_NAIVE_40
69.8
B_CELL_NAIVE_41
69.2
B_CELL_NAIVE_42
69.2
B_CELL_NAIVE_43
68.8
B_CELL_NAIVE_44
68.2
B_CELL_NAIVE_45
68.0
B_CELL_NAIVE_46
67.8
B_CELL_NAIVE_47
67.4
B_CELL_NAIVE_48
67.4
B_CELL_NAIVE_49
67.0
B_CELL_NAIVE_50
66.9
B_CELL_NAIVE_51
66.8
B_CELL_NAIVE_52
65.7
B_CELL_NAIVE_53
65.6
B_CELL_NAIVE_54
65.4
B_CELL_NAIVE_55
65.0
B_CELL_NAIVE_56
64.6
B_CELL_NAIVE_57
63.6
B_CELL_NAIVE_58
63.3
B_CELL_NAIVE_59
62.6
B_CELL_NAIVE_60
62.1
B_CELL_NAIVE_61
62.0
B_CELL_NAIVE_62
61.3
B_CELL_NAIVE_63
61.2
B_CELL_NAIVE_64
60.3
B_CELL_NAIVE_65
60.0
B_CELL_NAIVE_66
59.8
B_CELL_NAIVE_67
59.6
B_CELL_NAIVE_68
59.2
B_CELL_NAIVE_69
59.1
B_CELL_NAIVE_70
57.9
B_CELL_NAIVE_71
57.8
B_CELL_NAIVE_72
56.9
B_CELL_NAIVE_73
55.3
B_CELL_NAIVE_74
55.1
B_CELL_NAIVE_75
54.9
B_CELL_NAIVE_76
54.1
B_CELL_NAIVE_77
54.0
B_CELL_NAIVE_78
53.8
B_CELL_NAIVE_79
53.2
B_CELL_NAIVE_80
52.9
B_CELL_NAIVE_81
52.6
B_CELL_NAIVE_82
51.3
B_CELL_NAIVE_83
51.1
B_CELL_NAIVE_84
51.1
B_CELL_NAIVE_85
49.9
B_CELL_NAIVE_86
49.7
B_CELL_NAIVE_87
49.3
B_CELL_NAIVE_88
48.9
B_CELL_NAIVE_89
44.3
B_CELL_NAIVE_90
38.7
B_CELL_NAIVE_91
33.6
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