A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
20.7
nTPM
Monaco:
191.8
nTPM
Schmiedel:
118.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.7
HPA sample
nTPM
Classical monocyte nTPM: 2.9
Samples: 6
Max nTPM: 5.4
Min nTPM: 1.6
P10809_1003
1.7
P10809_1020
1.6
P10809_1039
2.8
P10809_1058
3.3
P10809_1080
5.4
P10809_1107
2.8
Intermediate monocyte nTPM: 11.8
Samples: 6
Max nTPM: 15.9
Min nTPM: 5.0
P10809_1004
15.9
P10809_1023
10.9
P10809_1042
5.0
P10809_1061
12.3
P10809_1081
12.2
P10809_1108
14.7
Non-classical monocyte nTPM: 20.7
Samples: 5
Max nTPM: 32.6
Min nTPM: 9.9
P10809_1005
16.5
P10809_1053
9.9
P10809_1072
32.6
P10809_1082
25.2
P10809_1109
19.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
191.8
Monaco sample
nTPM
Classical monocyte nTPM: 80.7
Samples: 4
Max nTPM: 162.2
Min nTPM: 22.9
RHH5313_R3680
22.9
RHH5221_R3593
162.2
RHH5250_R3622
98.5
RHH5279_R3651
39.3
Intermediate monocyte nTPM: 178.4
Samples: 4
Max nTPM: 336.5
Min nTPM: 55.0
RHH5314_R3681
55.0
RHH5222_R3594
336.5
RHH5251_R3623
256.2
RHH5280_R3652
65.7
Non-classical monocyte nTPM: 191.8
Samples: 4
Max nTPM: 405.2
Min nTPM: 49.6
RHH5315_R3682
49.6
RHH5223_R3595
405.2
RHH5252_R3624
234.7
RHH5281_R3653
77.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
118.0
Schmiedel sample id
TPM
Classical monocyte TPM: 82.4
Samples: 91
Max TPM: 187.3
Min TPM: 47.6
MONOCYTES_1
187.3
MONOCYTES_2
142.1
MONOCYTES_3
133.8
MONOCYTES_4
131.2
MONOCYTES_5
129.4
MONOCYTES_6
126.8
MONOCYTES_7
120.0
MONOCYTES_8
117.8
MONOCYTES_9
114.0
MONOCYTES_10
113.8
MONOCYTES_11
112.3
MONOCYTES_12
111.6
MONOCYTES_13
111.5
MONOCYTES_14
109.2
MONOCYTES_15
103.3
MONOCYTES_16
101.9
MONOCYTES_17
101.9
MONOCYTES_18
101.4
MONOCYTES_19
98.2
MONOCYTES_20
94.8
MONOCYTES_21
94.6
MONOCYTES_22
93.8
MONOCYTES_23
93.0
MONOCYTES_24
92.2
MONOCYTES_25
91.7
MONOCYTES_26
91.6
MONOCYTES_27
91.6
MONOCYTES_28
91.0
MONOCYTES_29
90.6
MONOCYTES_30
87.5
MONOCYTES_31
86.1
MONOCYTES_32
85.1
MONOCYTES_33
84.9
MONOCYTES_34
84.7
MONOCYTES_35
84.4
MONOCYTES_36
83.7
MONOCYTES_37
82.4
MONOCYTES_38
82.0
MONOCYTES_39
81.7
MONOCYTES_40
81.1
MONOCYTES_41
80.7
MONOCYTES_42
80.7
MONOCYTES_43
78.8
MONOCYTES_44
78.6
MONOCYTES_45
77.7
MONOCYTES_46
77.7
MONOCYTES_47
77.3
MONOCYTES_48
76.9
MONOCYTES_49
76.8
MONOCYTES_50
75.0
MONOCYTES_51
74.5
MONOCYTES_52
73.6
MONOCYTES_53
72.4
MONOCYTES_54
71.5
MONOCYTES_55
71.3
MONOCYTES_56
70.9
MONOCYTES_57
70.7
MONOCYTES_58
70.1
MONOCYTES_59
69.8
MONOCYTES_60
68.9
MONOCYTES_61
68.3
MONOCYTES_62
68.2
MONOCYTES_63
67.9
MONOCYTES_64
67.5
MONOCYTES_65
67.4
MONOCYTES_66
66.8
MONOCYTES_67
66.6
MONOCYTES_68
66.4
MONOCYTES_69
65.8
MONOCYTES_70
64.2
MONOCYTES_71
63.8
MONOCYTES_72
63.4
MONOCYTES_73
63.1
MONOCYTES_74
63.0
MONOCYTES_75
62.6
MONOCYTES_76
62.1
MONOCYTES_77
61.6
MONOCYTES_78
61.4
MONOCYTES_79
59.5
MONOCYTES_80
58.8
MONOCYTES_81
57.8
MONOCYTES_82
57.4
MONOCYTES_83
57.3
MONOCYTES_84
56.8
MONOCYTES_85
55.9
MONOCYTES_86
55.0
MONOCYTES_87
54.0
MONOCYTES_88
53.5
MONOCYTES_89
52.7
MONOCYTES_90
50.8
MONOCYTES_91
47.6
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Non-classical monocyte TPM: 118.0
Samples: 90
Max TPM: 322.3
Min TPM: 53.7
M2_1
322.3
M2_2
276.6
M2_3
241.9
M2_4
210.5
M2_5
207.4
M2_6
198.0
M2_7
187.3
M2_8
182.3
M2_9
181.0
M2_10
180.3
M2_11
178.5
M2_12
165.6
M2_13
160.7
M2_14
156.1
M2_15
151.1
M2_16
144.5
M2_17
143.0
M2_18
141.0
M2_19
138.2
M2_20
135.6
M2_21
135.2
M2_22
134.9
M2_23
134.8
M2_24
132.9
M2_25
132.7
M2_26
132.4
M2_27
132.1
M2_28
131.2
M2_29
129.2
M2_30
128.9
M2_31
126.5
M2_32
124.3
M2_33
123.8
M2_34
123.7
M2_35
123.2
M2_36
116.4
M2_37
115.9
M2_38
114.7
M2_39
114.4
M2_40
113.8
M2_41
113.3
M2_42
112.9
M2_43
111.5
M2_44
111.5
M2_45
110.9
M2_46
108.2
M2_47
107.5
M2_48
107.3
M2_49
107.0
M2_50
105.3
M2_51
103.3
M2_52
102.5
M2_53
102.4
M2_54
101.1
M2_55
100.5
M2_56
99.6
M2_57
98.6
M2_58
98.0
M2_59
94.9
M2_60
94.6
M2_61
93.4
M2_62
92.9
M2_63
91.7
M2_64
90.7
M2_65
90.7
M2_66
89.8
M2_67
87.7
M2_68
85.8
M2_69
83.5
M2_70
83.3
M2_71
82.9
M2_72
82.7
M2_73
81.8
M2_74
81.7
M2_75
81.0
M2_76
80.7
M2_77
78.1
M2_78
74.8
M2_79
72.0
M2_80
68.7
M2_81
68.6
M2_82
68.6
M2_83
68.2
M2_84
65.1
M2_85
65.0
M2_86
64.2
M2_87
62.2
M2_88
62.0
M2_89
55.9
M2_90
53.7
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