MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.1 nTPM
HPA Brain:128.6 nTPM
GTEx:28.1 nTPM
FANTOM5:291.7 Scaled Tags Per Million
Pig:279.0 nTPM
Mouse:100.5 nTPM
Allen mouse:9.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 128.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 113.4
1870 Female, age 42, unknown 150.8
2411 Female, age 72, unknown 142.6
1833 Male, age 53, unknown 127.4
1830 Male, age 51, unknown 126.2
2019 Male, age 18, unknown 118.3
1827 Male, age 72, unknown 100.8
2828 Female, age 72, unknown 100.3
2666 Male, age 74, left hemisphere 92.5
2219 Male, age 76, both hemispheres 90.0
2586 Male, age 75, left hemisphere 85.0
Dorsal raphe nucleus
nTPM: 107.2
2750 Male, age 76, both hemispheres 144.1
1828 Male, age 53, unknown 105.4
2016 Female, age 72, unknown 101.5
2298 Female, age 72, unknown 95.8
2047 Male, age 72, unknown 89.4
Inferior colliculus
nTPM: 99.0
1848 Female, age 42, unknown 107.6
2097 Female, age 72, unknown 102.7
1890 Male, age 53, unknown 93.5
2849 Male, age 72, unknown 92.3
Median raphe nucleus
nTPM: 109.6
2220 Male, age 76, midline 109.6
Periaquaductal grey, anterior
nTPM: 93.4
2502 Female, age 75, unknown 102.1
1947 Male, age 18, unknown 97.3
1795 Male, age 51, unknown 80.9
Periaquaductal grey, dorsal
nTPM: 85.4
2464 Female, age 72, unknown 100.8
1831 Male, age 72, unknown 82.8
1840 Male, age 53, unknown 80.3
2850 Male, age 76, both hemispheres 77.8
Periaquaductal grey, lateral
nTPM: 85.7
2272 Male, age 74, both hemispheres 90.8
2053 Male, age 18, unknown 88.2
2140 Male, age 76, both hemispheres 78.3
Pretectal area
nTPM: 94.2
1815 Male, age 53, unknown 103.8
1817 Female, age 42, unknown 103.6
2316 Male, age 76, right hemisphere 103.1
2007 Male, age 72, unknown 101.2
2273 Male, age 74, both hemispheres 101.1
2825 Male, age 18, unknown 100.3
2224 Female, age 72, unknown 96.1
2667 Female, age 75, unknown 91.8
2407 Male, age 75, both hemispheres 84.3
1944 Female, age 72, unknown 78.0
1816 Male, age 51, unknown 73.3
Red nucleus
nTPM: 128.6
1821 Female, age 72, unknown 159.7
1865 Male, age 51, unknown 159.7
1904 Male, age 53, unknown 148.6
1954 Female, age 42, unknown 138.7
2769 Male, age 72, unknown 130.1
2227 Male, age 72, unknown 128.7
2503 Female, age 72, unknown 125.7
2785 Male, age 18, unknown 123.5
2823 Male, age 76, right hemisphere 120.1
2725 Female, age 75, unknown 111.4
2588 Male, age 74, left hemisphere 103.0
2584 Male, age 75, left hemisphere 93.9
Substantia nigra
nTPM: 105.3
2409 Female, age 72, unknown 120.9
1851 Male, age 51, unknown 118.1
1889 Female, age 72, unknown 112.9
2241 Male, age 72, unknown 112.8
2590 Female, age 75, unknown 109.5
2583 Male, age 75, right hemisphere 107.0
1916 Female, age 42, unknown 102.5
2699 Male, age 18, unknown 98.8
1941 Male, age 53, unknown 98.6
2665 Male, age 74, both hemispheres 72.3
Superior colliculus
nTPM: 102.7
1913 Female, age 42, unknown 133.6
1995 Male, age 72, unknown 119.6
2587 Male, age 74, left hemisphere 115.8
1895 Male, age 76, right hemisphere 114.3
1839 Male, age 51, unknown 106.9
2668 Female, age 75, unknown 102.1
1796 Male, age 53, unknown 92.6
2261 Male, age 18, unknown 89.5
2087 Female, age 72, unknown 80.5
2664 Male, age 75, both hemispheres 71.6
Ventral tegmental area
nTPM: 115.4
2223 Female, age 72, unknown 143.5
2410 Female, age 72, unknown 133.5
2218 Male, age 76, both hemispheres 110.8
1915 Female, age 42, unknown 107.0
2021 Male, age 53, unknown 99.9
1942 Male, age 51, unknown 98.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 28.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.1
Samples: 183

Max nTPM: 85.6
Min nTPM: 8.2
Std nTPM: 13.2
Median nTPM: 25.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 85.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 77.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 76.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 75.8
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 75.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 74.5
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 56.9
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 54.4
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 54.0
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 52.0
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 46.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 291.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 291.7
FF:10158-103A5 76 years, female 291.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 279.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 279.0
Samples: 4

Max nTPM: 320.0
Min nTPM: 221.8
Sample A Female 320.0
Sample B Female 221.8
Sample C Male 302.7
Sample D Male 271.5
Midbrain
nTPM: 273.4
Samples: 4

Max nTPM: 409.2
Min nTPM: 201.5
Sample A Female 409.2
Sample B Female 229.7
Sample C Male 253.2
Sample D Male 201.5
Periaqueductal gray
nTPM: 228.4
Samples: 3

Max nTPM: 255.1
Min nTPM: 202.4
Sample B Female 227.6
Sample C Male 255.1
Sample D Male 202.4
Superior colliculi
nTPM: 240.5
Samples: 4

Max nTPM: 263.3
Min nTPM: 194.1
Sample A Female 263.3
Sample B Female 194.1
Sample C Male 257.5
Sample D Male 247.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 100.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 100.5
Samples: 4

Max nTPM: 104.2
Min nTPM: 95.8
Sample A Male 95.8
Sample B Male 104.0
Sample C Female 104.2
Sample D Female 98.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.6
72081482 Antisense, RP_051017_01_C07, Mouse strain C57BL/6J (56 days, male) 12.1
68546500 Antisense, RP_050120_02_F02, Mouse strain C57BL/6J (56 days, male) 7.1

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