MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:55.8 nTPM
HPA Brain:42.8 nTPM
GTEx:55.8 nTPM
FANTOM5:22.4 Scaled Tags Per Million
Pig:11.2 nTPM
Mouse:23.6 nTPM
Allen mouse:0.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 42.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.3
2586 Male, age 75, left hemisphere 62.9
2666 Male, age 74, left hemisphere 51.8
2019 Male, age 18, unknown 42.0
2828 Female, age 72, unknown 39.3
1827 Male, age 72, unknown 37.8
2411 Female, age 72, unknown 37.8
1833 Male, age 53, unknown 36.6
1870 Female, age 42, unknown 36.2
1830 Male, age 51, unknown 35.6
2219 Male, age 76, both hemispheres 33.4
Dorsal raphe nucleus
nTPM: 37.1
1828 Male, age 53, unknown 39.5
2298 Female, age 72, unknown 38.2
2016 Female, age 72, unknown 38.1
2047 Male, age 72, unknown 37.4
2750 Male, age 76, both hemispheres 32.2
Inferior colliculus
nTPM: 33.6
1890 Male, age 53, unknown 34.1
2849 Male, age 72, unknown 33.9
2097 Female, age 72, unknown 33.3
1848 Female, age 42, unknown 32.9
Median raphe nucleus
nTPM: 30.7
2220 Male, age 76, midline 30.7
Periaquaductal grey, anterior
nTPM: 36.4
2502 Female, age 75, unknown 40.4
1795 Male, age 51, unknown 37.4
1947 Male, age 18, unknown 31.3
Periaquaductal grey, dorsal
nTPM: 34.3
1831 Male, age 72, unknown 37.1
1840 Male, age 53, unknown 35.7
2464 Female, age 72, unknown 33.3
2850 Male, age 76, both hemispheres 31.0
Periaquaductal grey, lateral
nTPM: 31.3
2053 Male, age 18, unknown 36.3
2140 Male, age 76, both hemispheres 29.1
2272 Male, age 74, both hemispheres 28.5
Pretectal area
nTPM: 36.7
2007 Male, age 72, unknown 44.5
1816 Male, age 51, unknown 41.8
1817 Female, age 42, unknown 40.0
1815 Male, age 53, unknown 39.5
2825 Male, age 18, unknown 37.9
1944 Female, age 72, unknown 37.8
2407 Male, age 75, both hemispheres 36.7
2667 Female, age 75, unknown 32.4
2224 Female, age 72, unknown 32.0
2273 Male, age 74, both hemispheres 30.8
2316 Male, age 76, right hemisphere 29.9
Red nucleus
nTPM: 42.8
2588 Male, age 74, left hemisphere 60.7
2584 Male, age 75, left hemisphere 52.1
2725 Female, age 75, unknown 43.1
2503 Female, age 72, unknown 42.7
1821 Female, age 72, unknown 41.9
2769 Male, age 72, unknown 41.6
2785 Male, age 18, unknown 41.4
1904 Male, age 53, unknown 40.9
1954 Female, age 42, unknown 39.5
2227 Male, age 72, unknown 38.6
1865 Male, age 51, unknown 36.9
2823 Male, age 76, right hemisphere 34.0
Substantia nigra
nTPM: 38.7
2665 Male, age 74, both hemispheres 45.1
2583 Male, age 75, right hemisphere 43.4
1851 Male, age 51, unknown 42.5
1916 Female, age 42, unknown 40.3
1941 Male, age 53, unknown 40.0
1889 Female, age 72, unknown 39.5
2590 Female, age 75, unknown 36.3
2699 Male, age 18, unknown 35.8
2241 Male, age 72, unknown 35.6
2409 Female, age 72, unknown 28.8
Superior colliculus
nTPM: 37.8
2664 Male, age 75, both hemispheres 51.1
2587 Male, age 74, left hemisphere 41.4
2668 Female, age 75, unknown 39.3
2261 Male, age 18, unknown 37.7
1995 Male, age 72, unknown 35.9
1895 Male, age 76, right hemisphere 35.7
1796 Male, age 53, unknown 35.0
1839 Male, age 51, unknown 34.9
1913 Female, age 42, unknown 33.9
2087 Female, age 72, unknown 33.0
Ventral tegmental area
nTPM: 35.3
1915 Female, age 42, unknown 38.4
2410 Female, age 72, unknown 37.7
1942 Male, age 51, unknown 37.6
2223 Female, age 72, unknown 34.3
2021 Male, age 53, unknown 33.7
2218 Male, age 76, both hemispheres 29.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 55.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 55.8
Samples: 183

Max nTPM: 191.1
Min nTPM: 18.5
Std nTPM: 27.4
Median nTPM: 47.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 191.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 154.4
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 144.0
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 121.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 119.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 118.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 116.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 114.7
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 114.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 113.0
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 113.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 22.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.4
FF:10158-103A5 76 years, female 22.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 11.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.9
Samples: 4

Max nTPM: 12.0
Min nTPM: 8.9
Sample A Female 12.0
Sample B Female 9.1
Sample C Male 9.7
Sample D Male 8.9
Midbrain
nTPM: 10.5
Samples: 4

Max nTPM: 12.6
Min nTPM: 9.5
Sample A Female 12.6
Sample B Female 9.5
Sample C Male 9.5
Sample D Male 10.5
Periaqueductal gray
nTPM: 8.9
Samples: 3

Max nTPM: 9.6
Min nTPM: 8.1
Sample B Female 9.0
Sample C Male 9.6
Sample D Male 8.1
Superior colliculi
nTPM: 11.2
Samples: 4

Max nTPM: 12.1
Min nTPM: 9.9
Sample A Female 11.3
Sample B Female 12.1
Sample C Male 11.4
Sample D Male 9.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 23.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.7
Samples: 4

Max nTPM: 25.9
Min nTPM: 21.8
Sample A Male 21.8
Sample B Male 22.7
Sample C Female 24.2
Sample D Female 25.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
68546287 Antisense, RP_050120_02_C08, Mouse strain C57BL/6J (56 days, male) 0.8

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