MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:87.0 nTPM
HPA Brain:32.0 nTPM
GTEx:87.0 nTPM
FANTOM5:68.9 Scaled Tags Per Million
Pig:23.4 nTPM
Mouse:17.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 32.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.9
1870 Female, age 42, unknown 26.8
2219 Male, age 76, both hemispheres 25.1
1833 Male, age 53, unknown 23.8
2411 Female, age 72, unknown 23.8
1830 Male, age 51, unknown 21.9
2019 Male, age 18, unknown 21.5
1827 Male, age 72, unknown 21.3
2666 Male, age 74, left hemisphere 21.1
2828 Female, age 72, unknown 21.0
2586 Male, age 75, left hemisphere 12.7
Dorsal raphe nucleus
nTPM: 23.2
1828 Male, age 53, unknown 25.6
2298 Female, age 72, unknown 24.6
2047 Male, age 72, unknown 23.3
2016 Female, age 72, unknown 22.1
2750 Male, age 76, both hemispheres 20.3
Inferior colliculus
nTPM: 26.3
2849 Male, age 72, unknown 30.7
1890 Male, age 53, unknown 25.8
2097 Female, age 72, unknown 24.5
1848 Female, age 42, unknown 24.2
Median raphe nucleus
nTPM: 32.0
2220 Male, age 76, midline 32.0
Periaquaductal grey, anterior
nTPM: 20.8
1795 Male, age 51, unknown 22.4
2502 Female, age 75, unknown 20.4
1947 Male, age 18, unknown 19.5
Periaquaductal grey, dorsal
nTPM: 25.6
2850 Male, age 76, both hemispheres 34.8
1840 Male, age 53, unknown 23.5
2464 Female, age 72, unknown 23.3
1831 Male, age 72, unknown 20.6
Periaquaductal grey, lateral
nTPM: 23.0
2140 Male, age 76, both hemispheres 24.3
2272 Male, age 74, both hemispheres 23.6
2053 Male, age 18, unknown 21.0
Pretectal area
nTPM: 24.0
2224 Female, age 72, unknown 29.6
1817 Female, age 42, unknown 26.8
2667 Female, age 75, unknown 25.9
1944 Female, age 72, unknown 25.3
2825 Male, age 18, unknown 24.8
2273 Male, age 74, both hemispheres 24.6
1816 Male, age 51, unknown 24.5
2007 Male, age 72, unknown 24.0
1815 Male, age 53, unknown 23.3
2407 Male, age 75, both hemispheres 20.0
2316 Male, age 76, right hemisphere 14.9
Red nucleus
nTPM: 22.4
2725 Female, age 75, unknown 28.6
1821 Female, age 72, unknown 26.8
2823 Male, age 76, right hemisphere 26.3
1865 Male, age 51, unknown 24.6
1904 Male, age 53, unknown 22.3
2503 Female, age 72, unknown 22.2
2785 Male, age 18, unknown 21.4
1954 Female, age 42, unknown 20.9
2227 Male, age 72, unknown 20.9
2769 Male, age 72, unknown 19.9
2584 Male, age 75, left hemisphere 18.0
2588 Male, age 74, left hemisphere 16.6
Substantia nigra
nTPM: 27.4
2409 Female, age 72, unknown 37.3
2241 Male, age 72, unknown 35.3
2699 Male, age 18, unknown 30.9
1916 Female, age 42, unknown 30.5
1941 Male, age 53, unknown 27.3
1851 Male, age 51, unknown 25.3
2665 Male, age 74, both hemispheres 24.5
1889 Female, age 72, unknown 23.1
2590 Female, age 75, unknown 20.8
2583 Male, age 75, right hemisphere 18.6
Superior colliculus
nTPM: 22.9
2587 Male, age 74, left hemisphere 30.5
1895 Male, age 76, right hemisphere 25.0
1796 Male, age 53, unknown 24.2
1913 Female, age 42, unknown 24.2
2261 Male, age 18, unknown 22.6
1839 Male, age 51, unknown 22.0
2087 Female, age 72, unknown 21.8
2668 Female, age 75, unknown 21.0
1995 Male, age 72, unknown 20.7
2664 Male, age 75, both hemispheres 17.1
Ventral tegmental area
nTPM: 26.1
2218 Male, age 76, both hemispheres 30.7
2410 Female, age 72, unknown 28.9
1915 Female, age 42, unknown 27.0
2223 Female, age 72, unknown 26.5
1942 Male, age 51, unknown 22.5
2021 Male, age 53, unknown 21.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 87.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 87.0
Samples: 183

Max nTPM: 155.1
Min nTPM: 50.1
Std nTPM: 20.7
Median nTPM: 82.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 155.1
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 152.5
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 145.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 140.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 138.0
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 137.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 134.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 132.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 131.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 130.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 128.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 68.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 68.9
FF:10158-103A5 76 years, female 68.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 23.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.9
Samples: 4

Max nTPM: 27.1
Min nTPM: 13.5
Sample A Female 27.1
Sample B Female 21.7
Sample C Male 25.4
Sample D Male 13.5
Midbrain
nTPM: 23.4
Samples: 4

Max nTPM: 27.6
Min nTPM: 19.8
Sample A Female 27.6
Sample B Female 25.6
Sample C Male 20.5
Sample D Male 19.8
Periaqueductal gray
nTPM: 18.8
Samples: 3

Max nTPM: 21.3
Min nTPM: 14.6
Sample B Female 21.3
Sample C Male 20.6
Sample D Male 14.6
Superior colliculi
nTPM: 21.2
Samples: 4

Max nTPM: 24.0
Min nTPM: 18.8
Sample A Female 24.0
Sample B Female 20.5
Sample C Male 21.6
Sample D Male 18.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 17.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.2
Samples: 4

Max nTPM: 18.9
Min nTPM: 15.5
Sample A Male 18.9
Sample B Male 15.5
Sample C Female 16.7
Sample D Female 17.7

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