MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.9 nTPM
HPA Brain:66.2 nTPM
GTEx:14.9 nTPM
FANTOM5:20.1 Scaled Tags Per Million
Pig:16.7 nTPM
Mouse:6.2 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 66.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.2
2828 Female, age 72, unknown 55.0
2586 Male, age 75, left hemisphere 48.5
1870 Female, age 42, unknown 40.5
2666 Male, age 74, left hemisphere 40.0
1827 Male, age 72, unknown 38.9
1833 Male, age 53, unknown 31.4
2411 Female, age 72, unknown 31.2
1830 Male, age 51, unknown 28.8
2219 Male, age 76, both hemispheres 22.4
2019 Male, age 18, unknown 15.8
Dorsal raphe nucleus
nTPM: 56.1
2016 Female, age 72, unknown 73.2
2047 Male, age 72, unknown 66.6
1828 Male, age 53, unknown 56.0
2298 Female, age 72, unknown 49.7
2750 Male, age 76, both hemispheres 35.0
Inferior colliculus
nTPM: 39.5
1848 Female, age 42, unknown 49.2
2849 Male, age 72, unknown 43.7
1890 Male, age 53, unknown 35.7
2097 Female, age 72, unknown 29.4
Median raphe nucleus
nTPM: 46.2
2220 Male, age 76, midline 46.2
Periaquaductal grey, anterior
nTPM: 50.3
1795 Male, age 51, unknown 56.7
2502 Female, age 75, unknown 47.2
1947 Male, age 18, unknown 47.1
Periaquaductal grey, dorsal
nTPM: 66.2
1840 Male, age 53, unknown 86.6
2850 Male, age 76, both hemispheres 70.3
1831 Male, age 72, unknown 57.6
2464 Female, age 72, unknown 50.4
Periaquaductal grey, lateral
nTPM: 63.3
2053 Male, age 18, unknown 75.2
2140 Male, age 76, both hemispheres 69.6
2272 Male, age 74, both hemispheres 45.3
Pretectal area
nTPM: 41.1
2825 Male, age 18, unknown 55.5
2224 Female, age 72, unknown 54.4
2407 Male, age 75, both hemispheres 54.0
2273 Male, age 74, both hemispheres 48.5
2316 Male, age 76, right hemisphere 44.9
2667 Female, age 75, unknown 40.8
1944 Female, age 72, unknown 38.7
1816 Male, age 51, unknown 35.9
1815 Male, age 53, unknown 34.2
1817 Female, age 42, unknown 27.9
2007 Male, age 72, unknown 17.7
Red nucleus
nTPM: 25.7
2503 Female, age 72, unknown 32.3
2725 Female, age 75, unknown 30.3
1954 Female, age 42, unknown 28.7
2227 Male, age 72, unknown 26.8
2769 Male, age 72, unknown 25.8
2823 Male, age 76, right hemisphere 25.2
1865 Male, age 51, unknown 24.7
2584 Male, age 75, left hemisphere 24.5
1904 Male, age 53, unknown 24.2
1821 Female, age 72, unknown 22.9
2588 Male, age 74, left hemisphere 21.8
2785 Male, age 18, unknown 20.8
Substantia nigra
nTPM: 43.7
2699 Male, age 18, unknown 78.8
1916 Female, age 42, unknown 49.7
1851 Male, age 51, unknown 46.6
2241 Male, age 72, unknown 46.6
2590 Female, age 75, unknown 39.3
2409 Female, age 72, unknown 37.9
2583 Male, age 75, right hemisphere 37.9
2665 Male, age 74, both hemispheres 36.9
1941 Male, age 53, unknown 35.7
1889 Female, age 72, unknown 27.1
Superior colliculus
nTPM: 47.2
2664 Male, age 75, both hemispheres 80.8
1995 Male, age 72, unknown 59.4
1913 Female, age 42, unknown 51.4
1796 Male, age 53, unknown 47.0
1839 Male, age 51, unknown 44.3
2668 Female, age 75, unknown 41.9
2587 Male, age 74, left hemisphere 41.3
2087 Female, age 72, unknown 40.2
2261 Male, age 18, unknown 37.9
1895 Male, age 76, right hemisphere 27.3
Ventral tegmental area
nTPM: 43.7
2021 Male, age 53, unknown 49.8
1942 Male, age 51, unknown 46.4
1915 Female, age 42, unknown 46.0
2223 Female, age 72, unknown 40.8
2218 Male, age 76, both hemispheres 39.7
2410 Female, age 72, unknown 39.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 14.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.9
Samples: 183

Max nTPM: 63.3
Min nTPM: 1.9
Std nTPM: 8.1
Median nTPM: 13.8
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 63.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 61.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 36.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 35.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 34.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 32.3
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 30.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 29.8
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 27.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 27.5
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 27.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 20.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.1
FF:10158-103A5 76 years, female 20.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 16.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.4
Samples: 4

Max nTPM: 15.7
Min nTPM: 12.2
Sample A Female 12.2
Sample B Female 12.5
Sample C Male 13.1
Sample D Male 15.7
Midbrain
nTPM: 12.4
Samples: 4

Max nTPM: 19.1
Min nTPM: 6.6
Sample A Female 19.1
Sample B Female 13.3
Sample C Male 10.7
Sample D Male 6.6
Periaqueductal gray
nTPM: 16.7
Samples: 3

Max nTPM: 16.9
Min nTPM: 16.4
Sample B Female 16.4
Sample C Male 16.9
Sample D Male 16.7
Superior colliculi
nTPM: 10.3
Samples: 4

Max nTPM: 11.2
Min nTPM: 9.2
Sample A Female 9.2
Sample B Female 10.9
Sample C Male 10.0
Sample D Male 11.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 6.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.3
Samples: 4

Max nTPM: 6.7
Min nTPM: 5.5
Sample A Male 5.5
Sample B Male 6.7
Sample C Female 6.4
Sample D Female 6.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70717363 Antisense, RP_050414_03_D08, Mouse strain C57BL/6J (56 days, male) 0.1

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