MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.9 nTPM
HPA Brain:86.2 nTPM
GTEx:22.9 nTPM
FANTOM5:144.5 Scaled Tags Per Million
Pig:54.3 nTPM
Mouse:29.6 nTPM
Allen mouse:0.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 86.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 71.2
1830 Male, age 51, unknown 85.5
1833 Male, age 53, unknown 82.3
2019 Male, age 18, unknown 77.5
2411 Female, age 72, unknown 77.4
1870 Female, age 42, unknown 76.8
2828 Female, age 72, unknown 71.4
1827 Male, age 72, unknown 62.5
2666 Male, age 74, left hemisphere 62.5
2219 Male, age 76, both hemispheres 59.6
2586 Male, age 75, left hemisphere 56.9
Dorsal raphe nucleus
nTPM: 62.3
2750 Male, age 76, both hemispheres 74.1
2016 Female, age 72, unknown 70.7
1828 Male, age 53, unknown 64.8
2298 Female, age 72, unknown 52.3
2047 Male, age 72, unknown 49.6
Inferior colliculus
nTPM: 70.0
2097 Female, age 72, unknown 72.8
1890 Male, age 53, unknown 70.8
1848 Female, age 42, unknown 69.2
2849 Male, age 72, unknown 67.3
Median raphe nucleus
nTPM: 61.5
2220 Male, age 76, midline 61.5
Periaquaductal grey, anterior
nTPM: 60.5
2502 Female, age 75, unknown 66.7
1947 Male, age 18, unknown 61.1
1795 Male, age 51, unknown 53.9
Periaquaductal grey, dorsal
nTPM: 59.9
2850 Male, age 76, both hemispheres 64.9
2464 Female, age 72, unknown 63.4
1831 Male, age 72, unknown 55.8
1840 Male, age 53, unknown 55.3
Periaquaductal grey, lateral
nTPM: 62.8
2140 Male, age 76, both hemispheres 71.0
2272 Male, age 74, both hemispheres 58.8
2053 Male, age 18, unknown 58.6
Pretectal area
nTPM: 64.1
2316 Male, age 76, right hemisphere 78.3
2667 Female, age 75, unknown 74.5
1815 Male, age 53, unknown 69.2
1817 Female, age 42, unknown 68.8
2825 Male, age 18, unknown 64.9
2273 Male, age 74, both hemispheres 64.4
2224 Female, age 72, unknown 63.1
2007 Male, age 72, unknown 61.4
2407 Male, age 75, both hemispheres 59.8
1816 Male, age 51, unknown 51.2
1944 Female, age 72, unknown 49.9
Red nucleus
nTPM: 86.2
1904 Male, age 53, unknown 105.7
1865 Male, age 51, unknown 99.6
1821 Female, age 72, unknown 94.2
2227 Male, age 72, unknown 93.6
2769 Male, age 72, unknown 93.5
1954 Female, age 42, unknown 93.3
2503 Female, age 72, unknown 90.0
2823 Male, age 76, right hemisphere 83.0
2785 Male, age 18, unknown 82.3
2588 Male, age 74, left hemisphere 73.9
2725 Female, age 75, unknown 69.2
2584 Male, age 75, left hemisphere 55.6
Substantia nigra
nTPM: 69.5
2409 Female, age 72, unknown 88.3
2699 Male, age 18, unknown 85.5
2241 Male, age 72, unknown 73.2
1851 Male, age 51, unknown 68.6
2583 Male, age 75, right hemisphere 68.5
2665 Male, age 74, both hemispheres 68.2
1889 Female, age 72, unknown 63.0
1916 Female, age 42, unknown 61.2
2590 Female, age 75, unknown 60.7
1941 Male, age 53, unknown 58.2
Superior colliculus
nTPM: 68.3
1995 Male, age 72, unknown 84.2
1913 Female, age 42, unknown 84.1
1895 Male, age 76, right hemisphere 81.4
2587 Male, age 74, left hemisphere 73.4
2668 Female, age 75, unknown 72.5
1839 Male, age 51, unknown 66.4
1796 Male, age 53, unknown 58.7
2087 Female, age 72, unknown 54.8
2664 Male, age 75, both hemispheres 54.8
2261 Male, age 18, unknown 52.5
Ventral tegmental area
nTPM: 63.3
2223 Female, age 72, unknown 71.7
2410 Female, age 72, unknown 68.6
1915 Female, age 42, unknown 63.4
1942 Male, age 51, unknown 62.7
2218 Male, age 76, both hemispheres 58.8
2021 Male, age 53, unknown 54.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 22.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.9
Samples: 183

Max nTPM: 40.4
Min nTPM: 9.4
Std nTPM: 6.1
Median nTPM: 22.4
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 40.4
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 39.6
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 38.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 36.1
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 36.0
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 35.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 35.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 35.6
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 35.2
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 34.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 34.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 144.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 144.5
FF:10158-103A5 76 years, female 144.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 54.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 54.3
Samples: 4

Max nTPM: 68.6
Min nTPM: 48.1
Sample A Female 51.6
Sample B Female 49.0
Sample C Male 48.1
Sample D Male 68.6
Midbrain
nTPM: 53.6
Samples: 4

Max nTPM: 73.4
Min nTPM: 39.8
Sample A Female 73.4
Sample B Female 60.3
Sample C Male 39.8
Sample D Male 40.8
Periaqueductal gray
nTPM: 53.6
Samples: 3

Max nTPM: 63.0
Min nTPM: 45.4
Sample B Female 63.0
Sample C Male 45.4
Sample D Male 52.4
Superior colliculi
nTPM: 46.2
Samples: 4

Max nTPM: 50.0
Min nTPM: 43.5
Sample A Female 43.5
Sample B Female 45.7
Sample C Male 45.5
Sample D Male 50.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 29.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.7
Samples: 4

Max nTPM: 30.2
Min nTPM: 29.1
Sample A Male 29.1
Sample B Male 29.1
Sample C Female 30.2
Sample D Female 30.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
69549664 Antisense, RP_050317_04_C10, Mouse strain C57BL/6J (56 days, male) 0.8

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