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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:597.1 nTPM
HPA Brain:273.2 nTPM
GTEx:597.1 nTPM
FANTOM5:150.1 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

273.2
Sample id Sample description nTPM
Amygdala
nTPM: 273.2
2695 Female, age 67, right hemisphere 344.6
2814 Male, age 76, right hemisphere 302.8
1987 Female, age 91, left hemisphere 259.0
2514 Male, age 75, right hemisphere 238.9
2517 Female, age 94, left hemisphere 220.9
Basal amygdala
nTPM: 217.5
2609 Male, age 75, right hemisphere 253.3
2110 Male, age 80, left hemisphere 243.1
1955 Male, age 76, both hemispheres 233.3
2827 Female, age 67, right hemisphere 208.2
2243 Female, age 91, right hemisphere 189.7
2685 Female, age 94, left hemisphere 177.6
Central amygdala
nTPM: 246.8
2826 Female, age 94, left hemisphere 313.6
1905 Male, age 76, both hemispheres 292.1
2515 Male, age 75, right hemisphere 278.9
2239 Male, age 80, left hemisphere 189.8
2701 Female, age 91, right hemisphere 159.6
Corticomedial amygdala
nTPM: 188.7
2428 Male, age 75, right hemisphere 238.7
2829 Male, age 80, left hemisphere 212.3
2240 Male, age 76, both hemispheres 191.7
2242 Female, age 91, right hemisphere 167.1
2535 Female, age 67, right hemisphere 166.8
2429 Female, age 94, left hemisphere 155.6
Lateral amygdala
nTPM: 248.1
2516 Male, age 75, right hemisphere 279.9
1883 Male, age 76, both hemispheres 279.8
2830 Female, age 67, right hemisphere 261.6
2534 Female, age 94, left hemisphere 261.3
2256 Male, age 80, left hemisphere 222.7
2255 Female, age 91, right hemisphere 183.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

597.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 597.1
Samples: 181

Max nTPM: 1416.5
Min nTPM: 303.6
Std nTPM: 181.7
Median nTPM: 558.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1416.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1363.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1277.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1235.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 1094.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1080.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1070.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1058.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1052.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1022.5
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 899.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 890.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 869.1
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 812.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 810.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 789.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 788.3
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 785.9
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 770.4
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 759.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 757.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 739.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 738.4
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 738.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 736.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 732.5
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 727.5
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 716.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 709.9
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 705.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 701.1
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 698.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 696.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 696.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 695.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 692.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 688.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 687.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 685.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 676.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 673.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 666.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 664.7
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 662.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 660.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 658.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 656.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 655.9
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 653.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 652.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 652.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 642.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 641.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 639.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 638.3
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 636.9
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 636.6
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 630.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 629.4
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 628.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 627.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 626.2
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 624.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 620.8
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 614.5
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 613.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 607.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 601.1
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 599.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 598.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 597.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 595.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 591.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 591.4
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 588.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 584.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 582.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 581.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 579.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 578.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 577.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 576.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 576.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 571.4
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 571.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 571.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 570.0
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 562.2
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 560.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 559.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 558.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 558.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 555.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 553.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 553.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 553.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 551.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 549.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 549.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 547.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 546.2
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 545.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 541.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 541.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 541.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 539.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 532.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 530.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 530.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 529.9
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 526.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 525.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 524.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 522.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 519.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 518.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 518.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 517.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 516.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 514.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 514.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 514.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 512.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 511.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 511.0
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 510.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 510.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 509.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 508.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 508.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 507.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 503.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 501.4
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 497.8
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 493.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 492.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 491.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 490.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 489.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 482.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 481.3
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 474.8
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 472.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 471.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 469.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 464.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 462.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 459.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 458.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 455.4
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 452.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 452.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 449.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 447.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 444.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 444.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 439.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 434.1
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 430.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 429.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 427.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 426.5
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 425.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 422.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 422.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 422.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 421.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 413.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 407.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 403.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 402.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 399.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 383.6
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 377.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 376.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 363.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 325.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 316.5
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 313.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 309.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 303.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

150.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 150.1
FF:10151-102I7 76 years, female 150.1

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