HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:312.7 nTPM
HPA Brain:135.2 nTPM
GTEx:312.7 nTPM
FANTOM5:539.8 Scaled Tags Per Million
Pig:99.1 nTPM
Mouse:247.4 nTPM
Allen mouse:6.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 135.2
Sample id Sample description nTPM
Hippocampus
nTPM: 124.5
2529 Female, age 94, left hemisphere 183.8
2621 Female, age 67, right hemisphere 129.1
1898 Male, age 80, left hemisphere 124.3
2148 Female, age 91, left hemisphere 108.2
1911 Female, age 85, right hemisphere 103.9
1855 Male, age 76, left hemisphere 97.7
Dentate gyrus
nTPM: 117.8
2246 Female, age 85, both hemispheres 158.3
2530 Female, age 94, left hemisphere 152.1
2531 Female, age 67, both hemispheres 114.1
2010 Male, age 76, both hemispheres 107.0
2528 Male, age 74, both hemispheres 96.9
1927 Female, age 91, both hemispheres 78.6
Entorhinal gyrus
nTPM: 106.4
1938 Female, age 85, left hemisphere 127.0
1787 Male, age 76, left hemisphere 126.5
2117 Female, age 91, right hemisphere 116.4
2686 Male, age 75, right hemisphere 94.5
2764 Male, age 80, right hemisphere 92.2
2613 Female, age 94, left hemisphere 81.9
Hippocampus, CA1
nTPM: 101.0
2527 Male, age 74, both hemispheres 138.0
2749 Male, age 80, left hemisphere 104.1
1873 Female, age 85, both hemispheres 102.1
2045 Male, age 76, both hemispheres 81.9
2082 Female, age 91, right hemisphere 79.0
Hippocampus, CA2
nTPM: 115.5
2437 Female, age 94, left hemisphere 136.9
1940 Female, age 85, left hemisphere 125.9
2249 Male, age 74, both hemispheres 124.9
1892 Male, age 76, both hemispheres 119.5
2113 Female, age 91, right hemisphere 96.7
1963 Male, age 80, left hemisphere 88.8
Hippocampus, CA3
nTPM: 104.7
2436 Male, age 74, both hemispheres 133.7
1891 Female, age 85, both hemispheres 107.6
1867 Male, age 76, both hemispheres 106.9
2861 Female, age 67, both hemispheres 99.3
2137 Male, age 80, left hemisphere 95.7
2620 Female, age 94, left hemisphere 84.9
Parahippocampal cortex
nTPM: 130.4
2245 Female, age 91, both hemispheres 200.4
2532 Female, age 72, left hemisphere 168.5
2622 Female, age 67, right hemisphere 147.4
1850 Male, age 80, both hemispheres 129.2
2250 Female, age 67, right hemisphere 126.1
2018 Male, age 76, both hemispheres 115.3
2692 Male, age 74, both hemispheres 108.2
1933 Female, age 85, both hemispheres 107.4
1990 Female, age 91, right hemisphere 104.5
2693 Female, age 94, both hemispheres 97.2
Perirhinal gyrus
nTPM: 131.3
2521 Female, age 94, right hemisphere 158.2
1841 Female, age 85, right hemisphere 143.2
1794 Male, age 80, right hemisphere 125.2
2848 Male, age 76, right hemisphere 119.4
1847 Female, age 91, left hemisphere 110.6
Subiculum
nTPM: 135.2
2438 Female, age 94, left hemisphere 259.0
1901 Male, age 80, both hemispheres 127.1
2619 Male, age 74, both hemispheres 124.7
2042 Male, age 76, both hemispheres 114.0
1977 Female, age 85, both hemispheres 108.7
2729 Female, age 91, right hemisphere 77.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 312.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 312.7
Samples: 255

Max nTPM: 961.3
Min nTPM: 202.8
Std nTPM: 82.2
Median nTPM: 299.5
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 961.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 908.5
GTEX-1LVAO-0011-R1a-SM-F649O 60-69 years, male 564.6
GTEX-1PWST-0011-R1b-SM-F2I38 70-79 years, male 546.8
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 497.5
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 480.8
GTEX-1F52S-0011-R1a-SM-9OSX9 60-69 years, female 465.2
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 464.6
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 464.2
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 446.6
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 442.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 539.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 539.8
FF:10169-103B7 60 years, female 595.1
FF:10153-102I9 76 years, female 484.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 99.1
Pig sample Sample description nTPM
Subiculum
nTPM: 82.4
Samples: 4

Max nTPM: 111.1
Min nTPM: 68.9
Sample A Female 111.1
Sample B Female 77.6
Sample C Male 68.9
Sample D Male 72.1
Dorsal hippocampus
nTPM: 99.1
Samples: 4

Max nTPM: 133.2
Min nTPM: 66.0
Sample A Female 133.2
Sample B Female 92.2
Sample C Male 105.1
Sample D Male 66.0
Entorhinal cortex
nTPM: 82.5
Samples: 4

Max nTPM: 96.5
Min nTPM: 66.8
Sample A Female 81.7
Sample B Female 96.5
Sample C Male 84.8
Sample D Male 66.8
Ventral hippocampus
nTPM: 91.6
Samples: 4

Max nTPM: 113.1
Min nTPM: 78.2
Sample A Female 113.1
Sample B Female 78.2
Sample C Male 85.5
Sample D Male 89.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 247.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 204.3
Samples: 4

Max nTPM: 226.3
Min nTPM: 181.5
Sample A Male 181.5
Sample B Male 204.8
Sample C Female 226.3
Sample D Female 204.6
Hippocampal formation
nTPM: 247.4
Samples: 4

Max nTPM: 271.7
Min nTPM: 229.2
Sample A Male 271.7
Sample B Male 229.2
Sample C Female 231.6
Sample D Female 257.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 6.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.7
74750021 Antisense, RP_060220_05_E11, Mouse strain C57BL/6J (56 days, male) 7.5
70439183 Antisense, RP_050614_03_D02, Mouse strain C57BL/6J (56 days, male) 5.8

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