MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:422.7 nTPM
HPA Brain:318.0 nTPM
GTEx:422.7 nTPM
FANTOM5:453.1 Scaled Tags Per Million
Pig:125.5 nTPM
Mouse:203.0 nTPM
Allen mouse:3.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 318.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 106.9
2219 Male, age 76, both hemispheres 165.8
1870 Female, age 42, unknown 131.5
1833 Male, age 53, unknown 117.7
2019 Male, age 18, unknown 103.4
1827 Male, age 72, unknown 102.7
2666 Male, age 74, left hemisphere 99.3
1830 Male, age 51, unknown 98.3
2828 Female, age 72, unknown 93.4
2411 Female, age 72, unknown 91.0
2586 Male, age 75, left hemisphere 65.8
Dorsal raphe nucleus
nTPM: 135.0
2750 Male, age 76, both hemispheres 167.6
2047 Male, age 72, unknown 140.1
2298 Female, age 72, unknown 130.7
1828 Male, age 53, unknown 120.1
2016 Female, age 72, unknown 116.4
Inferior colliculus
nTPM: 120.9
2849 Male, age 72, unknown 146.5
1890 Male, age 53, unknown 118.3
1848 Female, age 42, unknown 114.7
2097 Female, age 72, unknown 104.1
Median raphe nucleus
nTPM: 318.0
2220 Male, age 76, midline 318.0
Periaquaductal grey, anterior
nTPM: 119.9
2502 Female, age 75, unknown 124.9
1947 Male, age 18, unknown 123.3
1795 Male, age 51, unknown 111.6
Periaquaductal grey, dorsal
nTPM: 133.0
2850 Male, age 76, both hemispheres 236.6
1840 Male, age 53, unknown 108.9
1831 Male, age 72, unknown 100.8
2464 Female, age 72, unknown 85.6
Periaquaductal grey, lateral
nTPM: 130.1
2140 Male, age 76, both hemispheres 166.4
2272 Male, age 74, both hemispheres 116.0
2053 Male, age 18, unknown 107.9
Pretectal area
nTPM: 133.0
2667 Female, age 75, unknown 172.8
2273 Male, age 74, both hemispheres 141.8
2407 Male, age 75, both hemispheres 139.9
1816 Male, age 51, unknown 135.5
1817 Female, age 42, unknown 134.3
2224 Female, age 72, unknown 132.2
1815 Male, age 53, unknown 130.5
1944 Female, age 72, unknown 124.9
2316 Male, age 76, right hemisphere 119.6
2825 Male, age 18, unknown 117.1
2007 Male, age 72, unknown 114.8
Red nucleus
nTPM: 123.7
1821 Female, age 72, unknown 158.6
1865 Male, age 51, unknown 154.2
1954 Female, age 42, unknown 142.3
2725 Female, age 75, unknown 138.8
1904 Male, age 53, unknown 135.5
2503 Female, age 72, unknown 135.3
2823 Male, age 76, right hemisphere 129.6
2227 Male, age 72, unknown 117.5
2785 Male, age 18, unknown 113.7
2769 Male, age 72, unknown 113.0
2584 Male, age 75, left hemisphere 75.3
2588 Male, age 74, left hemisphere 71.0
Substantia nigra
nTPM: 145.8
2699 Male, age 18, unknown 208.7
1916 Female, age 42, unknown 204.6
2241 Male, age 72, unknown 194.4
1851 Male, age 51, unknown 153.7
1941 Male, age 53, unknown 147.2
1889 Female, age 72, unknown 137.0
2409 Female, age 72, unknown 130.8
2665 Male, age 74, both hemispheres 111.4
2590 Female, age 75, unknown 93.5
2583 Male, age 75, right hemisphere 76.9
Superior colliculus
nTPM: 110.8
1895 Male, age 76, right hemisphere 128.6
1796 Male, age 53, unknown 125.2
2587 Male, age 74, left hemisphere 123.3
1913 Female, age 42, unknown 122.3
2087 Female, age 72, unknown 109.3
2668 Female, age 75, unknown 104.3
2261 Male, age 18, unknown 101.4
1839 Male, age 51, unknown 99.4
2664 Male, age 75, both hemispheres 98.9
1995 Male, age 72, unknown 95.1
Ventral tegmental area
nTPM: 150.8
2218 Male, age 76, both hemispheres 203.9
2223 Female, age 72, unknown 173.5
1915 Female, age 42, unknown 167.9
1942 Male, age 51, unknown 127.6
2021 Male, age 53, unknown 123.6
2410 Female, age 72, unknown 108.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 422.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 422.7
Samples: 183

Max nTPM: 1292.1
Min nTPM: 237.3
Std nTPM: 121.6
Median nTPM: 399.5
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 1292.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1206.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 864.5
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 766.9
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 662.9
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 620.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 580.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 578.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 573.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 570.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 569.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 453.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 453.1
FF:10158-103A5 76 years, female 453.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 125.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 125.2
Samples: 4

Max nTPM: 176.0
Min nTPM: 90.5
Sample A Female 176.0
Sample B Female 106.8
Sample C Male 127.5
Sample D Male 90.5
Midbrain
nTPM: 119.1
Samples: 4

Max nTPM: 134.7
Min nTPM: 105.6
Sample A Female 134.7
Sample B Female 128.2
Sample C Male 105.6
Sample D Male 107.9
Periaqueductal gray
nTPM: 108.4
Samples: 3

Max nTPM: 116.0
Min nTPM: 98.8
Sample B Female 110.3
Sample C Male 116.0
Sample D Male 98.8
Superior colliculi
nTPM: 125.5
Samples: 4

Max nTPM: 153.4
Min nTPM: 94.4
Sample A Female 153.4
Sample B Female 94.4
Sample C Male 141.7
Sample D Male 112.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 203.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 203.0
Samples: 4

Max nTPM: 220.0
Min nTPM: 192.1
Sample A Male 220.0
Sample B Male 192.1
Sample C Female 196.3
Sample D Female 203.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.2
74750021 Antisense, RP_060220_05_E11, Mouse strain C57BL/6J (56 days, male) 4.1
70439183 Antisense, RP_050614_03_D02, Mouse strain C57BL/6J (56 days, male) 2.3

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo