MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.9 nTPM
HPA Brain:146.9 nTPM
GTEx:33.9 nTPM
FANTOM5:407.2 Scaled Tags Per Million
Pig:73.7 nTPM
Mouse:11.3 nTPM
Allen mouse:1.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 146.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 95.0
1830 Male, age 51, unknown 134.9
2019 Male, age 18, unknown 131.5
2411 Female, age 72, unknown 119.6
1870 Female, age 42, unknown 117.4
1833 Male, age 53, unknown 111.5
2666 Male, age 74, left hemisphere 78.8
2828 Female, age 72, unknown 76.8
2586 Male, age 75, left hemisphere 61.9
2219 Male, age 76, both hemispheres 60.9
1827 Male, age 72, unknown 56.8
Dorsal raphe nucleus
nTPM: 72.2
2750 Male, age 76, both hemispheres 169.6
1828 Male, age 53, unknown 62.9
2016 Female, age 72, unknown 58.6
2047 Male, age 72, unknown 43.2
2298 Female, age 72, unknown 26.8
Inferior colliculus
nTPM: 50.2
1890 Male, age 53, unknown 64.4
1848 Female, age 42, unknown 53.8
2849 Male, age 72, unknown 44.7
2097 Female, age 72, unknown 37.9
Median raphe nucleus
nTPM: 83.9
2220 Male, age 76, midline 83.9
Periaquaductal grey, anterior
nTPM: 42.9
2502 Female, age 75, unknown 47.7
1947 Male, age 18, unknown 44.3
1795 Male, age 51, unknown 36.7
Periaquaductal grey, dorsal
nTPM: 34.0
2464 Female, age 72, unknown 57.8
1831 Male, age 72, unknown 44.6
2850 Male, age 76, both hemispheres 17.0
1840 Male, age 53, unknown 16.5
Periaquaductal grey, lateral
nTPM: 43.9
2272 Male, age 74, both hemispheres 56.5
2053 Male, age 18, unknown 55.2
2140 Male, age 76, both hemispheres 20.1
Pretectal area
nTPM: 55.5
2316 Male, age 76, right hemisphere 84.9
1815 Male, age 53, unknown 76.5
2407 Male, age 75, both hemispheres 63.5
2007 Male, age 72, unknown 63.3
1817 Female, age 42, unknown 60.1
2273 Male, age 74, both hemispheres 56.4
2825 Male, age 18, unknown 53.5
1944 Female, age 72, unknown 41.8
2667 Female, age 75, unknown 40.9
2224 Female, age 72, unknown 40.6
1816 Male, age 51, unknown 29.3
Red nucleus
nTPM: 146.9
2823 Male, age 76, right hemisphere 218.4
1865 Male, age 51, unknown 187.4
1904 Male, age 53, unknown 159.6
2769 Male, age 72, unknown 148.4
2227 Male, age 72, unknown 147.5
1821 Female, age 72, unknown 147.0
2588 Male, age 74, left hemisphere 145.3
2785 Male, age 18, unknown 139.0
2503 Female, age 72, unknown 138.2
2584 Male, age 75, left hemisphere 120.5
1954 Female, age 42, unknown 115.3
2725 Female, age 75, unknown 95.8
Substantia nigra
nTPM: 75.4
2409 Female, age 72, unknown 103.6
2583 Male, age 75, right hemisphere 100.0
2590 Female, age 75, unknown 90.6
1851 Male, age 51, unknown 89.0
1889 Female, age 72, unknown 81.7
1941 Male, age 53, unknown 74.4
2241 Male, age 72, unknown 62.3
2699 Male, age 18, unknown 59.0
1916 Female, age 42, unknown 51.8
2665 Male, age 74, both hemispheres 42.0
Superior colliculus
nTPM: 73.3
1913 Female, age 42, unknown 132.1
1995 Male, age 72, unknown 98.6
2668 Female, age 75, unknown 94.1
2587 Male, age 74, left hemisphere 89.7
1895 Male, age 76, right hemisphere 80.4
1839 Male, age 51, unknown 71.6
2087 Female, age 72, unknown 48.5
1796 Male, age 53, unknown 46.0
2261 Male, age 18, unknown 40.6
2664 Male, age 75, both hemispheres 31.9
Ventral tegmental area
nTPM: 99.1
2223 Female, age 72, unknown 178.9
2410 Female, age 72, unknown 104.5
2218 Male, age 76, both hemispheres 92.2
2021 Male, age 53, unknown 84.6
1942 Male, age 51, unknown 76.2
1915 Female, age 42, unknown 58.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 33.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.9
Samples: 183

Max nTPM: 156.5
Min nTPM: 2.7
Std nTPM: 23.3
Median nTPM: 27.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 156.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 123.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 123.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 106.3
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 98.1
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 92.6
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 79.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 78.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 77.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 75.1
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 73.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 407.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 407.2
FF:10158-103A5 76 years, female 407.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 73.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 54.9
Samples: 4

Max nTPM: 99.2
Min nTPM: 25.9
Sample A Female 53.0
Sample B Female 25.9
Sample C Male 41.3
Sample D Male 99.2
Midbrain
nTPM: 73.7
Samples: 4

Max nTPM: 207.1
Min nTPM: 24.6
Sample A Female 207.1
Sample B Female 36.8
Sample C Male 26.1
Sample D Male 24.6
Periaqueductal gray
nTPM: 27.7
Samples: 3

Max nTPM: 32.3
Min nTPM: 20.5
Sample B Female 30.2
Sample C Male 20.5
Sample D Male 32.3
Superior colliculi
nTPM: 42.5
Samples: 4

Max nTPM: 53.3
Min nTPM: 27.5
Sample A Female 45.0
Sample B Female 27.5
Sample C Male 44.3
Sample D Male 53.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 11.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.3
Samples: 4

Max nTPM: 11.6
Min nTPM: 10.7
Sample A Male 11.4
Sample B Male 10.7
Sample C Female 11.5
Sample D Female 11.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
71234722 Antisense, RP_050505_03_D12, Mouse strain C57BL/6J (56 days, male) 1.1
75084491 Antisense, RP_060412_04_C08, Mouse strain C57BL/6J (56 days, male) 1.1

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