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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Medium
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Medium
Outer plexiform layer:
Not detected
Photoreceptor cells:
Low
Pigment epithelial cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
257.5
nTPM
GTEx:
257.5
nTPM
FANTOM5:
700.4
Scaled Tags Per Million
Pig:
191.2
nTPM
Mouse:
737.1
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA042051
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Medium
Inner nuclear layer
Medium
Inner plexiform layer
Medium
Ganglion cells
Medium
Nerve fiber layer
Medium
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA044083
Pigment epithelial cells
Medium
Photoreceptor cells
Low
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Medium
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
High
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
257.5
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 257.5
Samples: 105
Max nTPM: 536.4
Min nTPM: 101.7
Std nTPM: 80.7
Median nTPM: 0.0
394_1
75 years, female
536.4
506_1
65 years, male
454.1
4_1
88 years, female
435.2
354_1
81 years, female
423.0
189_1
76 years, male
412.3
452_1
88 years, female
410.5
264_1
73 years, female
396.2
351_1
91 years, male
381.9
406_1
79 years, male
381.7
308_1
70 years, female
370.7
319_1
81 years, male
369.3
177_1
74 years, male
360.5
163_1
78 years, male
353.8
376_1
75 years, female
350.1
349_1
83 years, male
349.1
384_1
83 years, male
338.9
115_1
83 years, male
337.3
246_1
77 years, male
334.9
375_1
74 years, female
332.4
286_1
68 years, female
329.4
350_1
84 years, female
324.9
265_1
87 years, male
323.6
379_1
60 years, male
316.6
355_1
70 years, female
302.7
137_1
83 years, male
300.3
501_1
88 years, male
299.9
405_1
91 years, male
299.3
173_1
67 years, male
298.2
389_1
86 years, female
296.9
109_1
81 years, female
294.3
356_1
87 years, female
288.4
353_1
82 years, female
287.8
396_1
62 years, male
287.7
295_1
61 years, female
286.4
447_1
81 years, male
285.8
120_1
70 years, female
285.0
517_1
88 years, male
284.1
386_1
76 years, male
280.1
42_1
85 years, male
277.3
503_1
68 years, male
275.3
172_1
72 years, female
271.2
126_1
63 years, male
270.1
518_1
75 years, female
269.0
318_1
68 years, male
265.9
292_1
71 years, male
263.7
119_1
70 years, female
262.9
313_1
79 years, female
262.9
352_1
62 years, male
261.7
377_1
82 years, female
257.2
314_1
67 years, male
253.8
288_1
66 years, female
253.4
315_1
62 years, female
253.0
243_1
75 years, male
247.4
324_1
76 years, male
245.7
320_1
89 years, female
245.6
266_1
85 years, male
244.1
254_1
77 years, female
242.2
413_1
59 years, female
241.4
468_1
89 years, male
240.8
404_1
82 years, female
237.0
35_1
74 years, female
233.8
18_1
88 years, male
233.4
17_1
71 years, male
229.8
229_1
69 years, female
229.2
316_1
62 years, male
223.6
6_1
73 years, female
223.2
99_1
64 years, male
220.6
526_1
61 years, male
220.6
425_1
59 years, female
218.9
142_1
61 years, female
217.2
153_1
70 years, female
216.8
291_1
76 years, male
216.7
9_1
66 years, female
215.8
414_1
84 years, female
214.9
217_1
76 years, male
211.2
145_1
84 years, male
208.4
317_1
60 years, male
205.9
149_1
88 years, male
205.7
89_1
63 years, male
205.4
311_1
78 years, male
202.9
117_1
61 years, male
200.8
348_1
84 years, male
200.1
81_1
67 years, male
197.2
162_1
79 years, female
195.9
480_1
63 years, male
195.6
251_1
78 years, male
193.8
335_1
73 years, female
189.2
347_1
72 years, male
178.1
499_1
55 years, female
175.9
237_1
82 years, male
175.0
32_1
67 years, male
172.7
321_1
62 years, female
168.8
293_1
68 years, female
167.6
466_1
57 years, female
164.9
218_1
71 years, female
162.1
41_1
94 years, female
152.6
491_1
89 years, female
151.2
322_1
76 years, male
150.4
2_1
77 years, female
141.7
415_1
77 years, female
135.4
307_1
66 years, female
132.5
139_1
64 years, female
122.6
43_1
64 years, female
114.3
495_1
57 years, female
102.7
490_1
67 years, female
101.7
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.