On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
14.6
nTPM
HPA Brain:
29.0
nTPM
GTEx:
14.6
nTPM
FANTOM5:
12.8
Scaled Tags Per Million
Macaque:
19.1
nTPM
Mouse:
9.8
nTPM
Rat:
15.8
nTPM
Pig:
17.7
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
3757
Sample
Intensity
Spinal cord_01
7972
Spinal cord_02
6884
Spinal cord_03
3878
Spinal cord_04
3577
Spinal cord_05
4875
Spinal cord_06
2196
Spinal cord_07
3636
Spinal cord_08
3130
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
29.0
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 27.5
2193
Male, age 75, both hemispheres
30.3
2734
Male, age 80, both hemispheres
27.1
2819
Male, age 47, both hemispheres
26.9
2818
Female, age 79, both hemispheres
25.7
Cervical spinal cord, central gray nTPM: 27.7
2565
Male, age 75, midline
37.0
2194
Female, age 79, both hemispheres
27.5
1981
Female, age 72, midline
26.5
2816
Male, age 47, midline
25.4
2048
Male, age 55, midline
21.9
Cervical spinal cord, dorsal horn nTPM: 29.0
2069
Male, age 47, both hemispheres
32.7
2721
Male, age 90, both hemispheres
30.7
2297
Male, age 75, both hemispheres
29.9
1877
Male, age 55, unknown
28.1
2173
Female, age 72, unknown
27.0
2296
Male, age 66, both hemispheres
25.4
Cervical spinal cord, ventral horn nTPM: 26.9
2068
Male, age 55, unknown
29.3
2820
Female, age 79, both hemispheres
27.4
2480
Male, age 75, both hemispheres
26.9
2809
Male, age 90, both hemispheres
26.9
2295
Male, age 66, both hemispheres
26.7
2098
Female, age 72, unknown
23.9
Dorsal funiculus (white matter) nTPM: 27.6
2128
Male, age 75, both hemispheres
31.7
2810
Male, age 90, both hemispheres
27.4
2817
Male, age 47, both hemispheres
26.7
2812
Male, age 66, both hemispheres
26.6
2064
Female, age 79, both hemispheres
25.7
Lateral funiculus (white matter) nTPM: 28.6
2294
Male, age 66, both hemispheres
33.6
2192
Male, age 75, both hemispheres
27.5
2099
Male, age 90, both hemispheres
26.8
2094
Female, age 79, both hemispheres
26.5
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
14.6
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 14.6
Samples: 204
Max nTPM: 23.6
Min nTPM: 5.9
Std nTPM: 3.2
Median nTPM: 14.9
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
23.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
22.2
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
22.2
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
20.7
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
20.6
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
20.5
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
20.0
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
19.6
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
19.4
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
19.2
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
19.1
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
19.1
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
18.9
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
18.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
18.8
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
18.8
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
18.7
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
18.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
18.6
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
18.6
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
18.4
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
18.3
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
18.2
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
18.2
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
18.1
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
18.0
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
18.0
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
17.9
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
17.8
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
17.8
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
17.8
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
17.8
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
17.7
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
17.6
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
17.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
17.6
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
17.5
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
17.4
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
17.4
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
17.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
17.4
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
17.4
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
17.3
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
17.2
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
17.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
17.1
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
17.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
17.0
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
17.0
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
16.9
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
16.8
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
16.7
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
16.7
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
16.7
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
16.6
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
16.6
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
16.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
16.6
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
16.6
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
16.5
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
16.5
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
16.5
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
16.4
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
16.4
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
16.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
16.3
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
16.2
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
16.2
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
16.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
16.1
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
16.0
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
15.9
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
15.9
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
15.9
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
15.8
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
15.8
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
15.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
15.7
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
15.6
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
15.6
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
15.6
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
15.6
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
15.6
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
15.5
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
15.5
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
15.4
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
15.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
15.4
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
15.4
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
15.3
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
15.3
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
15.3
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
15.2
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
15.2
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
15.2
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
15.1
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
15.1
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
15.0
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
15.0
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
15.0
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
15.0
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
14.9
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
14.9
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
14.9
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
14.9
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
14.9
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
14.9
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
14.9
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
14.8
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
14.7
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
14.6
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
14.6
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
14.5
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
14.5
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
14.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
14.5
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
14.4
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
14.4
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
14.3
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
14.3
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
14.2
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
14.1
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
14.1
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
14.0
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
14.0
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
14.0
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
13.9
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
13.9
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
13.7
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
13.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
13.5
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
13.5
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
13.4
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
13.4
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
13.4
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
13.3
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
13.3
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
13.3
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
13.3
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
13.3
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
13.2
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
13.2
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
13.1
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
13.1
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
13.1
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
13.1
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
13.1
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
12.9
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
12.9
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
12.9
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
12.9
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
12.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
12.9
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
12.8
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
12.8
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
12.8
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
12.7
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
12.6
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
12.4
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
12.2
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
12.2
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
12.2
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
12.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
12.1
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
12.0
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
11.8
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
11.8
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
11.7
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
11.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
11.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
11.6
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
11.5
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
11.4
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
11.4
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
11.4
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
11.1
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
10.6
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
10.6
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
10.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
10.4
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
10.3
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
10.3
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
10.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
10.0
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
9.8
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
9.6
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
9.5
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
9.4
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
9.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
9.3
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
8.8
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
8.7
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
8.6
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
8.4
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
8.3
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
8.2
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
7.9
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
7.8
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
7.6
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
7.4
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
7.4
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
7.3
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
7.3
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
5.9
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
19.1
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 19.2
Samples: 2
Max nTPM: 26.3
Min nTPM: 12.0
Sample A
12.0
Sample B
26.3
Ventral spinal cord nTPM: 17.9
Samples: 1
Max nTPM: 17.9
Min nTPM: 17.9
Sample A
17.9
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
17.7
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 17.7
Samples: 4
Max nTPM: 19.5
Min nTPM: 15.9
Sample A
Female
19.5
Sample B
Female
15.9
Sample C
Male
18.3
Sample D
Male
17.2
Ventral spinal cord nTPM: 17.7
Samples: 4
Max nTPM: 20.0
Min nTPM: 15.0
Sample A
Female
20.0
Sample B
Female
15.0
Sample C
Male
18.9
Sample D
Male
16.8
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
9.8
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 9.8
Samples: 4
Max nTPM: 10.0
Min nTPM: 9.5
Sample A
9.5
Sample B
10.0
Sample C
10.0
Sample D
9.5
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
15.8
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 15.8
Samples: 4
Max nTPM: 16.7
Min nTPM: 13.9
Sample A
16.3
Sample A
13.9
Sample A
16.7
Sample A
16.2
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The Human Protein Atlas project is funded
