A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
9.5
nTPM
Monaco:
17.9
nTPM
Schmiedel:
35.2
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.5
HPA sample
nTPM
NK-cell nTPM: 9.5
Samples: 6
Max nTPM: 17.2
Min nTPM: 4.0
P10809_1013
8.0
P10809_1033
13.7
P10809_1052
9.6
P10809_1071
4.3
P10809_1093
4.0
P10809_1103
17.2
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.9
Monaco sample
nTPM
NK-cell nTPM: 17.9
Samples: 4
Max nTPM: 25.8
Min nTPM: 13.1
RHH5316_R3683
25.8
RHH5224_R3596
13.1
RHH5253_R3625
19.5
RHH5282_R3654
13.2
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
35.2
Schmiedel sample id
TPM
NK-cell TPM: 35.2
Samples: 90
Max TPM: 57.4
Min TPM: 11.4
NK_1
57.4
NK_2
55.3
NK_3
53.4
NK_4
52.7
NK_5
51.7
NK_6
49.9
NK_7
49.2
NK_8
47.9
NK_9
47.9
NK_10
47.6
NK_11
47.4
NK_12
47.0
NK_13
47.0
NK_14
46.5
NK_15
46.4
NK_16
46.4
NK_17
46.1
NK_18
45.7
NK_19
45.4
NK_20
45.3
NK_21
44.9
NK_22
44.6
NK_23
44.3
NK_24
44.0
NK_25
43.1
NK_26
43.0
NK_27
42.8
NK_28
42.4
NK_29
42.1
NK_30
41.8
NK_31
41.5
NK_32
41.5
NK_33
41.2
NK_34
41.2
NK_35
40.7
NK_36
39.2
NK_37
39.2
NK_38
38.7
NK_39
37.5
NK_40
36.8
NK_41
36.6
NK_42
36.4
NK_43
36.1
NK_44
35.3
NK_45
35.1
NK_46
35.0
NK_47
34.9
NK_48
34.6
NK_49
34.2
NK_50
33.6
NK_51
33.4
NK_52
33.3
NK_53
33.3
NK_54
32.8
NK_55
32.7
NK_56
32.6
NK_57
31.8
NK_58
31.6
NK_59
31.5
NK_60
31.4
NK_61
31.3
NK_62
31.3
NK_63
30.0
NK_64
29.5
NK_65
28.9
NK_66
28.7
NK_67
27.9
NK_68
26.6
NK_69
26.4
NK_70
25.4
NK_71
24.9
NK_72
24.9
NK_73
23.7
NK_74
23.5
NK_75
23.4
NK_76
23.3
NK_77
22.9
NK_78
22.4
NK_79
21.5
NK_80
20.7
NK_81
20.0
NK_82
19.5
NK_83
19.5
NK_84
17.0
NK_85
15.9
NK_86
15.4
NK_87
15.3
NK_88
15.2
NK_89
14.7
NK_90
11.4
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