A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
8.4
nTPM
Monaco:
23.9
nTPM
Schmiedel:
18.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.4
HPA sample
nTPM
Classical monocyte nTPM: 5.7
Samples: 6
Max nTPM: 7.2
Min nTPM: 4.2
P10809_1003
7.2
P10809_1020
7.0
P10809_1039
4.4
P10809_1058
4.2
P10809_1080
4.2
P10809_1107
7.1
Intermediate monocyte nTPM: 8.4
Samples: 6
Max nTPM: 12.6
Min nTPM: 0.2
P10809_1004
11.9
P10809_1023
12.6
P10809_1042
11.5
P10809_1061
0.2
P10809_1081
3.2
P10809_1108
10.9
Non-classical monocyte nTPM: 8.2
Samples: 5
Max nTPM: 13.2
Min nTPM: 0.1
P10809_1005
13.2
P10809_1053
9.7
P10809_1072
0.1
P10809_1082
6.2
P10809_1109
11.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.9
Monaco sample
nTPM
Classical monocyte nTPM: 18.2
Samples: 4
Max nTPM: 18.7
Min nTPM: 17.1
RHH5313_R3680
17.1
RHH5221_R3593
18.7
RHH5250_R3622
18.3
RHH5279_R3651
18.5
Intermediate monocyte nTPM: 19.2
Samples: 4
Max nTPM: 23.7
Min nTPM: 14.5
RHH5314_R3681
21.1
RHH5222_R3594
23.7
RHH5251_R3623
17.3
RHH5280_R3652
14.5
Non-classical monocyte nTPM: 23.9
Samples: 4
Max nTPM: 30.6
Min nTPM: 19.5
RHH5315_R3682
21.9
RHH5223_R3595
30.6
RHH5252_R3624
23.7
RHH5281_R3653
19.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.8
Schmiedel sample id
TPM
Classical monocyte TPM: 16.6
Samples: 91
Max TPM: 23.8
Min TPM: 8.9
MONOCYTES_1
23.8
MONOCYTES_2
23.5
MONOCYTES_3
23.5
MONOCYTES_4
23.4
MONOCYTES_5
23.3
MONOCYTES_6
23.2
MONOCYTES_7
23.0
MONOCYTES_8
22.9
MONOCYTES_9
22.8
MONOCYTES_10
22.6
MONOCYTES_11
22.5
MONOCYTES_12
22.3
MONOCYTES_13
22.2
MONOCYTES_14
21.7
MONOCYTES_15
21.3
MONOCYTES_16
20.9
MONOCYTES_17
20.7
MONOCYTES_18
20.7
MONOCYTES_19
20.1
MONOCYTES_20
20.1
MONOCYTES_21
19.7
MONOCYTES_22
19.7
MONOCYTES_23
19.6
MONOCYTES_24
19.6
MONOCYTES_25
19.5
MONOCYTES_26
19.2
MONOCYTES_27
19.2
MONOCYTES_28
19.1
MONOCYTES_29
18.9
MONOCYTES_30
18.8
MONOCYTES_31
18.7
MONOCYTES_32
18.6
MONOCYTES_33
18.6
MONOCYTES_34
18.4
MONOCYTES_35
18.3
MONOCYTES_36
18.0
MONOCYTES_37
17.9
MONOCYTES_38
17.5
MONOCYTES_39
17.3
MONOCYTES_40
17.1
MONOCYTES_41
17.1
MONOCYTES_42
17.1
MONOCYTES_43
16.8
MONOCYTES_44
16.8
MONOCYTES_45
16.6
MONOCYTES_46
16.4
MONOCYTES_47
16.2
MONOCYTES_48
16.1
MONOCYTES_49
16.1
MONOCYTES_50
16.0
MONOCYTES_51
15.8
MONOCYTES_52
15.8
MONOCYTES_53
15.4
MONOCYTES_54
15.1
MONOCYTES_55
15.1
MONOCYTES_56
15.0
MONOCYTES_57
14.9
MONOCYTES_58
14.9
MONOCYTES_59
14.7
MONOCYTES_60
14.7
MONOCYTES_61
14.6
MONOCYTES_62
14.5
MONOCYTES_63
14.4
MONOCYTES_64
14.4
MONOCYTES_65
14.3
MONOCYTES_66
14.2
MONOCYTES_67
14.1
MONOCYTES_68
14.1
MONOCYTES_69
14.0
MONOCYTES_70
13.2
MONOCYTES_71
13.1
MONOCYTES_72
13.0
MONOCYTES_73
12.9
MONOCYTES_74
12.9
MONOCYTES_75
12.5
MONOCYTES_76
12.4
MONOCYTES_77
12.4
MONOCYTES_78
12.2
MONOCYTES_79
12.2
MONOCYTES_80
12.0
MONOCYTES_81
11.8
MONOCYTES_82
11.7
MONOCYTES_83
11.0
MONOCYTES_84
10.8
MONOCYTES_85
10.7
MONOCYTES_86
10.3
MONOCYTES_87
9.5
MONOCYTES_88
9.5
MONOCYTES_89
8.9
MONOCYTES_90
8.9
MONOCYTES_91
8.9
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Non-classical monocyte TPM: 18.8
Samples: 90
Max TPM: 30.3
Min TPM: 6.5
M2_1
30.3
M2_2
28.9
M2_3
28.8
M2_4
28.6
M2_5
27.8
M2_6
27.3
M2_7
27.1
M2_8
26.9
M2_9
26.6
M2_10
25.6
M2_11
25.4
M2_12
25.3
M2_13
24.8
M2_14
24.5
M2_15
24.5
M2_16
24.3
M2_17
24.2
M2_18
24.0
M2_19
23.9
M2_20
23.7
M2_21
23.7
M2_22
23.5
M2_23
22.9
M2_24
22.9
M2_25
22.8
M2_26
22.7
M2_27
22.7
M2_28
22.6
M2_29
22.1
M2_30
21.9
M2_31
21.9
M2_32
21.9
M2_33
21.8
M2_34
21.7
M2_35
21.7
M2_36
21.4
M2_37
21.4
M2_38
21.3
M2_39
20.9
M2_40
20.9
M2_41
20.2
M2_42
19.9
M2_43
19.8
M2_44
19.6
M2_45
19.5
M2_46
19.5
M2_47
19.4
M2_48
19.4
M2_49
19.3
M2_50
19.3
M2_51
18.8
M2_52
18.8
M2_53
18.6
M2_54
17.6
M2_55
17.0
M2_56
16.9
M2_57
16.7
M2_58
16.2
M2_59
16.0
M2_60
15.8
M2_61
15.8
M2_62
15.6
M2_63
15.6
M2_64
15.1
M2_65
14.9
M2_66
14.8
M2_67
14.6
M2_68
14.5
M2_69
13.8
M2_70
13.8
M2_71
13.6
M2_72
13.4
M2_73
13.2
M2_74
12.9
M2_75
12.7
M2_76
11.9
M2_77
11.8
M2_78
11.7
M2_79
11.4
M2_80
10.8
M2_81
10.2
M2_82
10.1
M2_83
9.5
M2_84
9.5
M2_85
9.3
M2_86
8.4
M2_87
8.1
M2_88
7.9
M2_89
7.4
M2_90
6.5
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