MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:85.0 nTPM
HPA Brain:142.6 nTPM
GTEx:85.0 nTPM
FANTOM5:167.6 Scaled Tags Per Million
Pig:74.1 nTPM
Mouse:340.6 nTPM
Allen mouse:12.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 142.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 120.8
2019 Male, age 18, unknown 164.5
2411 Female, age 72, unknown 139.6
1827 Male, age 72, unknown 127.5
2219 Male, age 76, both hemispheres 121.4
1833 Male, age 53, unknown 119.9
2828 Female, age 72, unknown 116.1
1830 Male, age 51, unknown 114.1
1870 Female, age 42, unknown 109.8
2666 Male, age 74, left hemisphere 102.5
2586 Male, age 75, left hemisphere 93.2
Dorsal raphe nucleus
nTPM: 121.8
1828 Male, age 53, unknown 135.6
2298 Female, age 72, unknown 130.6
2750 Male, age 76, both hemispheres 118.2
2047 Male, age 72, unknown 115.0
2016 Female, age 72, unknown 109.4
Inferior colliculus
nTPM: 125.4
2097 Female, age 72, unknown 137.3
1848 Female, age 42, unknown 128.8
1890 Male, age 53, unknown 122.3
2849 Male, age 72, unknown 113.3
Median raphe nucleus
nTPM: 111.8
2220 Male, age 76, midline 111.8
Periaquaductal grey, anterior
nTPM: 114.1
1947 Male, age 18, unknown 118.9
1795 Male, age 51, unknown 116.2
2502 Female, age 75, unknown 107.3
Periaquaductal grey, dorsal
nTPM: 109.6
2464 Female, age 72, unknown 115.1
2850 Male, age 76, both hemispheres 112.6
1840 Male, age 53, unknown 109.2
1831 Male, age 72, unknown 101.6
Periaquaductal grey, lateral
nTPM: 113.9
2272 Male, age 74, both hemispheres 137.3
2053 Male, age 18, unknown 104.3
2140 Male, age 76, both hemispheres 100.1
Pretectal area
nTPM: 138.6
2007 Male, age 72, unknown 170.4
1817 Female, age 42, unknown 163.2
1816 Male, age 51, unknown 162.5
2667 Female, age 75, unknown 156.0
1944 Female, age 72, unknown 149.5
1815 Male, age 53, unknown 143.6
2273 Male, age 74, both hemispheres 132.3
2224 Female, age 72, unknown 123.7
2316 Male, age 76, right hemisphere 120.3
2407 Male, age 75, both hemispheres 107.4
2825 Male, age 18, unknown 95.9
Red nucleus
nTPM: 124.2
1821 Female, age 72, unknown 142.1
2785 Male, age 18, unknown 140.3
2823 Male, age 76, right hemisphere 132.4
2503 Female, age 72, unknown 129.7
2725 Female, age 75, unknown 128.2
1904 Male, age 53, unknown 122.5
1865 Male, age 51, unknown 118.6
2227 Male, age 72, unknown 118.0
2588 Male, age 74, left hemisphere 117.7
2769 Male, age 72, unknown 116.9
1954 Female, age 42, unknown 116.6
2584 Male, age 75, left hemisphere 107.2
Substantia nigra
nTPM: 142.6
1916 Female, age 42, unknown 169.7
2241 Male, age 72, unknown 166.5
1889 Female, age 72, unknown 159.4
2409 Female, age 72, unknown 149.1
1851 Male, age 51, unknown 147.4
1941 Male, age 53, unknown 140.0
2590 Female, age 75, unknown 126.8
2665 Male, age 74, both hemispheres 125.3
2699 Male, age 18, unknown 124.3
2583 Male, age 75, right hemisphere 117.2
Superior colliculus
nTPM: 120.2
2087 Female, age 72, unknown 144.1
1895 Male, age 76, right hemisphere 138.4
2587 Male, age 74, left hemisphere 129.2
2261 Male, age 18, unknown 128.3
1796 Male, age 53, unknown 124.8
2668 Female, age 75, unknown 119.5
1839 Male, age 51, unknown 112.7
1995 Male, age 72, unknown 106.1
1913 Female, age 42, unknown 105.2
2664 Male, age 75, both hemispheres 94.1
Ventral tegmental area
nTPM: 122.4
2410 Female, age 72, unknown 147.0
2218 Male, age 76, both hemispheres 136.0
1915 Female, age 42, unknown 130.7
1942 Male, age 51, unknown 111.0
2223 Female, age 72, unknown 106.7
2021 Male, age 53, unknown 103.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 85.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 85.0
Samples: 183

Max nTPM: 168.1
Min nTPM: 41.0
Std nTPM: 25.0
Median nTPM: 78.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 168.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 161.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 160.8
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 156.7
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 156.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 142.6
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 142.5
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 137.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 135.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 130.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 128.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 167.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 167.6
FF:10158-103A5 76 years, female 167.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 74.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 60.0
Samples: 4

Max nTPM: 71.9
Min nTPM: 49.3
Sample A Female 71.9
Sample B Female 53.8
Sample C Male 65.1
Sample D Male 49.3
Midbrain
nTPM: 66.2
Samples: 4

Max nTPM: 83.8
Min nTPM: 53.6
Sample A Female 53.6
Sample B Female 61.7
Sample C Male 83.8
Sample D Male 65.6
Periaqueductal gray
nTPM: 52.9
Samples: 3

Max nTPM: 56.9
Min nTPM: 47.1
Sample B Female 56.9
Sample C Male 54.6
Sample D Male 47.1
Superior colliculi
nTPM: 74.1
Samples: 4

Max nTPM: 94.0
Min nTPM: 63.0
Sample A Female 74.8
Sample B Female 64.6
Sample C Male 94.0
Sample D Male 63.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 340.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 340.6
Samples: 4

Max nTPM: 346.5
Min nTPM: 327.9
Sample A Male 344.2
Sample B Male 346.5
Sample C Female 327.9
Sample D Female 343.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 12.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.3
655502 Antisense, RP_040922_01_C03, Mouse strain C57BL/6J (56 days, male) 13.6
72723 Antisense, RP_040407_01_A05, Mouse strain C57BL/6J (56 days, male) 11.0

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