MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.7 nTPM
HPA Brain:263.0 nTPM
GTEx:27.7 nTPM
FANTOM5:26.1 Scaled Tags Per Million
Pig:23.2 nTPM
Mouse:19.4 nTPM
Allen mouse:1.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 263.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 256.1
1830 Male, age 51, unknown 305.7
1833 Male, age 53, unknown 278.9
2666 Male, age 74, left hemisphere 270.0
2019 Male, age 18, unknown 268.2
2219 Male, age 76, both hemispheres 266.6
2828 Female, age 72, unknown 256.7
2586 Male, age 75, left hemisphere 245.2
2411 Female, age 72, unknown 229.4
1827 Male, age 72, unknown 226.1
1870 Female, age 42, unknown 214.0
Dorsal raphe nucleus
nTPM: 226.5
2047 Male, age 72, unknown 245.1
2750 Male, age 76, both hemispheres 236.0
1828 Male, age 53, unknown 229.1
2016 Female, age 72, unknown 221.4
2298 Female, age 72, unknown 201.0
Inferior colliculus
nTPM: 248.1
2849 Male, age 72, unknown 280.5
1890 Male, age 53, unknown 240.4
1848 Female, age 42, unknown 236.4
2097 Female, age 72, unknown 235.3
Median raphe nucleus
nTPM: 249.5
2220 Male, age 76, midline 249.5
Periaquaductal grey, anterior
nTPM: 200.6
1947 Male, age 18, unknown 207.0
1795 Male, age 51, unknown 205.3
2502 Female, age 75, unknown 189.6
Periaquaductal grey, dorsal
nTPM: 246.3
2850 Male, age 76, both hemispheres 271.0
1831 Male, age 72, unknown 253.2
2464 Female, age 72, unknown 247.2
1840 Male, age 53, unknown 213.7
Periaquaductal grey, lateral
nTPM: 227.3
2140 Male, age 76, both hemispheres 237.6
2053 Male, age 18, unknown 227.0
2272 Male, age 74, both hemispheres 217.3
Pretectal area
nTPM: 252.3
2407 Male, age 75, both hemispheres 299.0
2667 Female, age 75, unknown 278.6
1944 Female, age 72, unknown 277.3
1816 Male, age 51, unknown 263.5
2316 Male, age 76, right hemisphere 254.9
2825 Male, age 18, unknown 253.1
1815 Male, age 53, unknown 248.0
2224 Female, age 72, unknown 241.9
2007 Male, age 72, unknown 224.4
1817 Female, age 42, unknown 218.3
2273 Male, age 74, both hemispheres 216.0
Red nucleus
nTPM: 263.0
2823 Male, age 76, right hemisphere 343.4
2584 Male, age 75, left hemisphere 295.3
1954 Female, age 42, unknown 273.0
2588 Male, age 74, left hemisphere 269.0
2785 Male, age 18, unknown 266.7
1904 Male, age 53, unknown 262.4
2725 Female, age 75, unknown 253.8
1865 Male, age 51, unknown 248.4
2503 Female, age 72, unknown 245.7
2769 Male, age 72, unknown 244.9
2227 Male, age 72, unknown 230.6
1821 Female, age 72, unknown 222.6
Substantia nigra
nTPM: 245.1
2241 Male, age 72, unknown 319.6
2583 Male, age 75, right hemisphere 276.0
1941 Male, age 53, unknown 262.6
2665 Male, age 74, both hemispheres 254.6
2590 Female, age 75, unknown 242.7
2699 Male, age 18, unknown 242.2
1889 Female, age 72, unknown 240.0
2409 Female, age 72, unknown 222.4
1916 Female, age 42, unknown 198.0
1851 Male, age 51, unknown 192.4
Superior colliculus
nTPM: 254.9
2664 Male, age 75, both hemispheres 284.4
2087 Female, age 72, unknown 275.0
1895 Male, age 76, right hemisphere 274.7
1913 Female, age 42, unknown 270.0
1839 Male, age 51, unknown 254.3
2587 Male, age 74, left hemisphere 249.4
2668 Female, age 75, unknown 249.1
1796 Male, age 53, unknown 232.8
1995 Male, age 72, unknown 231.8
2261 Male, age 18, unknown 227.6
Ventral tegmental area
nTPM: 221.0
2218 Male, age 76, both hemispheres 244.9
2223 Female, age 72, unknown 242.5
2021 Male, age 53, unknown 237.9
1942 Male, age 51, unknown 225.6
1915 Female, age 42, unknown 192.4
2410 Female, age 72, unknown 182.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 27.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.7
Samples: 183

Max nTPM: 69.8
Min nTPM: 13.8
Std nTPM: 7.6
Median nTPM: 26.6
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 69.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 52.1
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 51.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 48.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 48.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 45.6
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 45.5
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 44.5
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 39.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 38.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 38.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 26.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.1
FF:10158-103A5 76 years, female 26.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 23.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.0
Samples: 4

Max nTPM: 25.8
Min nTPM: 14.2
Sample A Female 24.2
Sample B Female 14.2
Sample C Male 19.7
Sample D Male 25.8
Midbrain
nTPM: 23.2
Samples: 4

Max nTPM: 39.7
Min nTPM: 17.1
Sample A Female 39.7
Sample B Female 17.1
Sample C Male 17.4
Sample D Male 18.7
Periaqueductal gray
nTPM: 15.1
Samples: 3

Max nTPM: 17.1
Min nTPM: 13.6
Sample B Female 17.1
Sample C Male 13.6
Sample D Male 14.6
Superior colliculi
nTPM: 19.9
Samples: 4

Max nTPM: 25.9
Min nTPM: 12.7
Sample A Female 25.9
Sample B Female 12.7
Sample C Male 18.8
Sample D Male 22.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 19.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.5
Samples: 4

Max nTPM: 22.9
Min nTPM: 16.5
Sample A Male 22.9
Sample B Male 19.1
Sample C Female 16.5
Sample D Female 19.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
71717081 Antisense, RP_050503_03_F04, Mouse strain C57BL/6J (56 days, male) 1.8
69735825 Antisense, RP_050503_03_F04, Mouse strain C57BL/6J (56 days, male) 0.6

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