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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:111.4 nTPM
HPA Brain:43.3 nTPM
GTEx:111.4 nTPM
FANTOM5:20.8 Scaled Tags Per Million
Pig:38.3 nTPM
Mouse:62.8 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

43.3
Sample id Sample description nTPM
Amygdala
nTPM: 41.4
2695 Female, age 67, right hemisphere 51.3
2814 Male, age 76, right hemisphere 41.2
1987 Female, age 91, left hemisphere 40.5
2514 Male, age 75, right hemisphere 39.6
2517 Female, age 94, left hemisphere 34.3
Basal amygdala
nTPM: 35.4
2609 Male, age 75, right hemisphere 42.1
2827 Female, age 67, right hemisphere 37.6
2110 Male, age 80, left hemisphere 35.7
2685 Female, age 94, left hemisphere 35.4
1955 Male, age 76, both hemispheres 32.3
2243 Female, age 91, right hemisphere 29.3
Central amygdala
nTPM: 43.3
2826 Female, age 94, left hemisphere 54.3
2515 Male, age 75, right hemisphere 44.9
1905 Male, age 76, both hemispheres 42.1
2239 Male, age 80, left hemisphere 38.3
2701 Female, age 91, right hemisphere 36.6
Corticomedial amygdala
nTPM: 34.1
2428 Male, age 75, right hemisphere 45.7
2829 Male, age 80, left hemisphere 35.3
2240 Male, age 76, both hemispheres 34.1
2242 Female, age 91, right hemisphere 32.1
2429 Female, age 94, left hemisphere 29.0
2535 Female, age 67, right hemisphere 28.4
Lateral amygdala
nTPM: 39.7
2830 Female, age 67, right hemisphere 50.2
2516 Male, age 75, right hemisphere 49.7
2534 Female, age 94, left hemisphere 39.9
1883 Male, age 76, both hemispheres 35.7
2256 Male, age 80, left hemisphere 34.6
2255 Female, age 91, right hemisphere 28.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

111.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 111.4
Samples: 181

Max nTPM: 337.4
Min nTPM: 38.7
Std nTPM: 46.5
Median nTPM: 104.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 337.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 335.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 260.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 243.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 218.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 213.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 212.8
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 196.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 196.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 189.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 189.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 182.5
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 181.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 176.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 175.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 174.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 173.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 172.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 172.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 159.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 159.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 158.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 155.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 154.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 154.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 153.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 153.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 152.1
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 151.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 151.2
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 143.6
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 143.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 143.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 142.7
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 142.3
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 140.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 140.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 140.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 139.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 137.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 137.0
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 136.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 135.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 133.9
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 131.7
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 130.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 130.4
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 130.4
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 129.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 128.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 128.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 126.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 124.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 124.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 123.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 122.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 122.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 121.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 120.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 119.9
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 119.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 119.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 119.1
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 118.8
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 116.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 116.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 115.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 114.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 114.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 114.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 114.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 114.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 113.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 112.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 112.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 111.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 110.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 110.5
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 109.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 109.8
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 108.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 108.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 108.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 108.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 107.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 107.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 107.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 106.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 104.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 104.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 104.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 103.4
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 102.8
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 101.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 101.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 100.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 100.6
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 100.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 99.3
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 98.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 97.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 97.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 97.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 96.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 95.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 95.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 95.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 94.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 94.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 93.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 92.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 91.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 91.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 90.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 90.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 89.6
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 88.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 88.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 87.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 87.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 87.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 86.6
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 85.1
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 84.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 84.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 84.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 83.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 82.9
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 82.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 82.2
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 82.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 81.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 79.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 78.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 77.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 77.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 77.5
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 77.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 76.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 75.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 75.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 75.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 75.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 74.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 74.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 73.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 73.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 73.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 73.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 72.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 71.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 71.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 70.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 70.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 69.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 69.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 69.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 68.4
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 68.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 67.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 67.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 66.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 66.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 64.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 63.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 62.4
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 62.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 60.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 59.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 59.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 58.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 58.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 58.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 54.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 51.9
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 50.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 48.5
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 48.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 47.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 44.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 38.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

20.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 20.8
FF:10151-102I7 76 years, female 20.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

38.3
Pig sample Sample description nTPM
Amygdala
nTPM: 38.3
Samples: 4

Max nTPM: 45.7
Min nTPM: 29.7
Sample A Female 43.6
Sample B Female 45.7
Sample C Male 34.2
Sample D Male 29.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

62.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 62.8
Samples: 4

Max nTPM: 64.8
Min nTPM: 58.0
Sample A Male 58.0
Sample B Male 64.0
Sample C Female 64.5
Sample D Female 64.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.0
69015500 Antisense, RP_050315_01_B03, Mouse strain C57BL/6J (56 days, male) 0.0

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