MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:134.4 nTPM
HPA Brain:57.8 nTPM
GTEx:134.4 nTPM
FANTOM5:30.0 Scaled Tags Per Million
Pig:46.7 nTPM
Mouse:86.8 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 57.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.8
2666 Male, age 74, left hemisphere 52.4
1870 Female, age 42, unknown 51.6
1833 Male, age 53, unknown 51.2
2586 Male, age 75, left hemisphere 50.2
1830 Male, age 51, unknown 50.1
2411 Female, age 72, unknown 45.8
2019 Male, age 18, unknown 43.9
2828 Female, age 72, unknown 43.5
1827 Male, age 72, unknown 41.3
2219 Male, age 76, both hemispheres 38.4
Dorsal raphe nucleus
nTPM: 46.1
2750 Male, age 76, both hemispheres 50.6
2047 Male, age 72, unknown 47.2
2016 Female, age 72, unknown 47.0
1828 Male, age 53, unknown 43.6
2298 Female, age 72, unknown 41.9
Inferior colliculus
nTPM: 40.7
1890 Male, age 53, unknown 43.0
1848 Female, age 42, unknown 42.8
2097 Female, age 72, unknown 39.1
2849 Male, age 72, unknown 37.9
Median raphe nucleus
nTPM: 41.9
2220 Male, age 76, midline 41.9
Periaquaductal grey, anterior
nTPM: 40.7
2502 Female, age 75, unknown 46.9
1947 Male, age 18, unknown 38.5
1795 Male, age 51, unknown 36.7
Periaquaductal grey, dorsal
nTPM: 41.0
2464 Female, age 72, unknown 43.6
1840 Male, age 53, unknown 41.2
2850 Male, age 76, both hemispheres 40.9
1831 Male, age 72, unknown 38.1
Periaquaductal grey, lateral
nTPM: 38.8
2053 Male, age 18, unknown 45.3
2140 Male, age 76, both hemispheres 36.9
2272 Male, age 74, both hemispheres 34.1
Pretectal area
nTPM: 41.4
1817 Female, age 42, unknown 51.5
1815 Male, age 53, unknown 50.8
2316 Male, age 76, right hemisphere 44.7
2224 Female, age 72, unknown 40.7
2825 Male, age 18, unknown 40.0
2007 Male, age 72, unknown 39.8
2667 Female, age 75, unknown 39.1
1816 Male, age 51, unknown 38.9
2407 Male, age 75, both hemispheres 36.8
1944 Female, age 72, unknown 36.5
2273 Male, age 74, both hemispheres 36.2
Red nucleus
nTPM: 57.8
2503 Female, age 72, unknown 69.6
1821 Female, age 72, unknown 68.8
1904 Male, age 53, unknown 62.8
2227 Male, age 72, unknown 62.2
1865 Male, age 51, unknown 62.1
1954 Female, age 42, unknown 61.3
2769 Male, age 72, unknown 56.3
2823 Male, age 76, right hemisphere 55.9
2588 Male, age 74, left hemisphere 54.5
2725 Female, age 75, unknown 50.7
2785 Male, age 18, unknown 48.9
2584 Male, age 75, left hemisphere 40.3
Substantia nigra
nTPM: 43.6
2699 Male, age 18, unknown 51.8
2241 Male, age 72, unknown 50.7
1889 Female, age 72, unknown 46.5
2583 Male, age 75, right hemisphere 45.6
2665 Male, age 74, both hemispheres 44.2
1916 Female, age 42, unknown 42.6
1851 Male, age 51, unknown 42.4
2590 Female, age 75, unknown 40.5
1941 Male, age 53, unknown 36.9
2409 Female, age 72, unknown 34.7
Superior colliculus
nTPM: 44.9
2668 Female, age 75, unknown 49.0
1913 Female, age 42, unknown 48.6
1895 Male, age 76, right hemisphere 48.4
1995 Male, age 72, unknown 46.6
1839 Male, age 51, unknown 45.8
2087 Female, age 72, unknown 44.7
2587 Male, age 74, left hemisphere 43.2
2664 Male, age 75, both hemispheres 42.8
2261 Male, age 18, unknown 42.6
1796 Male, age 53, unknown 37.4
Ventral tegmental area
nTPM: 44.3
2223 Female, age 72, unknown 49.6
2410 Female, age 72, unknown 44.5
1915 Female, age 42, unknown 43.9
1942 Male, age 51, unknown 43.9
2218 Male, age 76, both hemispheres 42.7
2021 Male, age 53, unknown 41.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 134.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 134.4
Samples: 183

Max nTPM: 343.3
Min nTPM: 24.3
Std nTPM: 56.8
Median nTPM: 124.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 343.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 324.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 320.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 303.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 292.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 269.7
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 266.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 263.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 251.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 249.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 248.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 30.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.0
FF:10158-103A5 76 years, female 30.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 46.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 46.7
Samples: 4

Max nTPM: 63.8
Min nTPM: 37.1
Sample A Female 63.8
Sample B Female 39.2
Sample C Male 46.7
Sample D Male 37.1
Midbrain
nTPM: 46.1
Samples: 4

Max nTPM: 59.9
Min nTPM: 37.5
Sample A Female 59.9
Sample B Female 46.1
Sample C Male 40.9
Sample D Male 37.5
Periaqueductal gray
nTPM: 36.0
Samples: 3

Max nTPM: 39.8
Min nTPM: 31.4
Sample B Female 36.7
Sample C Male 39.8
Sample D Male 31.4
Superior colliculi
nTPM: 40.6
Samples: 4

Max nTPM: 53.6
Min nTPM: 28.6
Sample A Female 53.6
Sample B Female 28.6
Sample C Male 41.8
Sample D Male 38.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 86.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 86.8
Samples: 4

Max nTPM: 91.3
Min nTPM: 82.2
Sample A Male 91.3
Sample B Male 88.7
Sample C Female 84.9
Sample D Female 82.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69015500 Antisense, RP_050315_01_B03, Mouse strain C57BL/6J (56 days, male) 0.0

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