MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:150.6 nTPM
HPA Brain:154.1 nTPM
GTEx:150.6 nTPM
FANTOM5:243.5 Scaled Tags Per Million
Pig:241.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 154.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 117.8
2019 Male, age 18, unknown 150.7
2586 Male, age 75, left hemisphere 142.2
2411 Female, age 72, unknown 124.1
1870 Female, age 42, unknown 114.6
2666 Male, age 74, left hemisphere 110.9
2219 Male, age 76, both hemispheres 109.6
1833 Male, age 53, unknown 109.3
1830 Male, age 51, unknown 107.5
2828 Female, age 72, unknown 107.2
1827 Male, age 72, unknown 101.9
Dorsal raphe nucleus
nTPM: 125.0
2047 Male, age 72, unknown 132.4
2298 Female, age 72, unknown 129.9
1828 Male, age 53, unknown 128.1
2750 Male, age 76, both hemispheres 124.9
2016 Female, age 72, unknown 109.6
Inferior colliculus
nTPM: 117.6
2097 Female, age 72, unknown 131.9
1848 Female, age 42, unknown 120.9
1890 Male, age 53, unknown 120.2
2849 Male, age 72, unknown 97.2
Median raphe nucleus
nTPM: 138.6
2220 Male, age 76, midline 138.6
Periaquaductal grey, anterior
nTPM: 109.4
2502 Female, age 75, unknown 126.8
1947 Male, age 18, unknown 104.0
1795 Male, age 51, unknown 97.5
Periaquaductal grey, dorsal
nTPM: 100.0
2850 Male, age 76, both hemispheres 105.2
1840 Male, age 53, unknown 102.8
2464 Female, age 72, unknown 102.1
1831 Male, age 72, unknown 90.0
Periaquaductal grey, lateral
nTPM: 91.1
2140 Male, age 76, both hemispheres 93.2
2272 Male, age 74, both hemispheres 90.1
2053 Male, age 18, unknown 89.9
Pretectal area
nTPM: 114.5
1817 Female, age 42, unknown 141.9
2007 Male, age 72, unknown 140.7
1944 Female, age 72, unknown 139.1
1816 Male, age 51, unknown 122.9
1815 Male, age 53, unknown 118.8
2667 Female, age 75, unknown 115.9
2224 Female, age 72, unknown 101.1
2407 Male, age 75, both hemispheres 99.6
2825 Male, age 18, unknown 95.5
2273 Male, age 74, both hemispheres 93.5
2316 Male, age 76, right hemisphere 90.2
Red nucleus
nTPM: 123.8
1821 Female, age 72, unknown 166.5
1954 Female, age 42, unknown 141.3
1865 Male, age 51, unknown 131.3
2785 Male, age 18, unknown 130.9
1904 Male, age 53, unknown 128.3
2769 Male, age 72, unknown 126.0
2227 Male, age 72, unknown 123.8
2503 Female, age 72, unknown 113.4
2584 Male, age 75, left hemisphere 112.2
2823 Male, age 76, right hemisphere 104.7
2725 Female, age 75, unknown 104.3
2588 Male, age 74, left hemisphere 103.4
Substantia nigra
nTPM: 154.1
2241 Male, age 72, unknown 205.7
1916 Female, age 42, unknown 202.3
1941 Male, age 53, unknown 171.4
1851 Male, age 51, unknown 171.1
2409 Female, age 72, unknown 153.6
1889 Female, age 72, unknown 152.5
2699 Male, age 18, unknown 143.1
2583 Male, age 75, right hemisphere 125.2
2665 Male, age 74, both hemispheres 111.7
2590 Female, age 75, unknown 104.6
Superior colliculus
nTPM: 110.2
2668 Female, age 75, unknown 154.2
2087 Female, age 72, unknown 124.2
2664 Male, age 75, both hemispheres 116.8
1839 Male, age 51, unknown 105.2
2261 Male, age 18, unknown 104.5
1895 Male, age 76, right hemisphere 104.0
1796 Male, age 53, unknown 103.4
2587 Male, age 74, left hemisphere 102.4
1913 Female, age 42, unknown 98.3
1995 Male, age 72, unknown 88.9
Ventral tegmental area
nTPM: 130.2
2410 Female, age 72, unknown 154.2
1915 Female, age 42, unknown 140.8
2218 Male, age 76, both hemispheres 133.1
2223 Female, age 72, unknown 123.1
1942 Male, age 51, unknown 122.7
2021 Male, age 53, unknown 106.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 150.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 150.6
Samples: 183

Max nTPM: 274.5
Min nTPM: 69.7
Std nTPM: 37.0
Median nTPM: 144.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 274.5
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 270.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 268.9
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 259.4
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 258.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 243.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 242.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 236.7
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 225.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 223.4
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 220.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 243.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 243.5
FF:10158-103A5 76 years, female 243.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 241.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 229.4
Samples: 4

Max nTPM: 310.5
Min nTPM: 160.2
Sample A Female 310.5
Sample B Female 182.7
Sample C Male 264.0
Sample D Male 160.2
Midbrain
nTPM: 241.8
Samples: 4

Max nTPM: 283.6
Min nTPM: 211.4
Sample A Female 283.6
Sample B Female 226.9
Sample C Male 245.3
Sample D Male 211.4
Periaqueductal gray
nTPM: 209.9
Samples: 3

Max nTPM: 249.6
Min nTPM: 173.9
Sample B Female 206.3
Sample C Male 249.6
Sample D Male 173.9
Superior colliculi
nTPM: 232.8
Samples: 4

Max nTPM: 276.6
Min nTPM: 167.0
Sample A Female 271.0
Sample B Female 167.0
Sample C Male 276.6
Sample D Male 216.7

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