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MAP1LC3B
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  • MAP1LC3B
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:140.7 nTPM
HPA Brain:126.8 nTPM
GTEx:140.7 nTPM
FANTOM5:272.7 Scaled Tags Per Million
Pig:322.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

126.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 119.6
1981 Female, age 72, midline 135.2
2048 Male, age 55, midline 131.7
2194 Female, age 79, both hemispheres 122.1
2816 Male, age 47, midline 104.7
2565 Male, age 75, midline 104.4
Cervical spinal cord, dorsal horn
nTPM: 126.8
2173 Female, age 72, unknown 159.3
2296 Male, age 66, both hemispheres 147.2
2069 Male, age 47, both hemispheres 123.8
2297 Male, age 75, both hemispheres 114.1
1877 Male, age 55, unknown 108.2
2721 Male, age 90, both hemispheres 108.2
Cervical spinal cord, ventral horn
nTPM: 124.6
2480 Male, age 75, both hemispheres 137.5
2098 Female, age 72, unknown 135.7
2295 Male, age 66, both hemispheres 126.2
2068 Male, age 55, unknown 124.0
2820 Female, age 79, both hemispheres 112.5
2809 Male, age 90, both hemispheres 112.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

140.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 140.7
Samples: 204

Max nTPM: 207.1
Min nTPM: 89.3
Std nTPM: 22.4
Median nTPM: 139.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 207.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 205.5
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 201.4
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 196.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 194.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 189.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 188.9
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 188.2
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 185.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 182.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 182.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 181.7
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 180.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 179.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 178.0
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 177.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 177.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 175.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 172.0
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 170.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 169.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 169.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 169.6
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 169.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 164.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 164.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 163.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 162.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 162.4
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 161.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 161.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 160.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 160.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 159.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 159.5
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 159.5
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 159.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 158.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 157.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 157.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 157.4
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 157.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 157.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 155.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 155.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 154.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 153.6
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 153.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 153.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 153.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 152.3
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 152.0
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 151.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 151.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 151.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 151.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 151.1
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 151.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 150.7
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 150.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 150.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 150.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 150.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 149.9
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 149.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 149.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 149.6
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 149.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 149.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 148.8
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 148.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 148.2
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 148.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 147.9
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 147.9
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 147.5
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 146.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 146.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 146.6
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 146.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 146.5
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 146.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 146.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 146.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 146.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 145.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 145.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 145.3
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 145.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 144.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 144.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 144.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 142.9
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 142.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 141.8
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 141.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 141.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 141.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 140.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 140.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 140.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 139.8
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 139.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 139.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 138.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 138.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 138.0
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 137.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 137.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 137.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 136.8
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 136.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 136.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 136.4
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 136.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 135.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 135.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 135.7
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 135.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 135.1
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 134.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 134.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 134.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 134.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 134.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 133.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 133.0
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 132.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 132.8
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 132.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 132.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 131.7
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 131.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 130.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 130.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 130.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 130.1
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 129.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 128.9
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 128.8
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 128.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 128.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 128.2
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 128.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 128.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 127.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 127.6
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 127.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 126.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 124.7
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 124.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 123.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 123.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 123.2
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 122.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 122.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 122.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 122.2
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 121.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 121.6
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 121.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 121.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 120.2
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 120.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 119.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 119.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 119.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 119.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 118.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 118.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 118.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 118.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 117.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 117.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 116.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 116.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 116.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 116.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 115.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 115.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 115.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 115.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 114.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 114.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 114.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 113.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 112.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 111.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 110.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 109.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 107.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 107.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 107.3
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 107.3
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 106.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 105.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 102.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 102.7
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 100.8
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 100.7
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 100.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 96.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 95.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 89.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

272.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 272.7
FF:10181-103D1 60 years, female 349.2
FF:10159-103A6 76 years, female 196.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

322.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 239.8
Samples: 4

Max nTPM: 252.3
Min nTPM: 226.7
Sample A Female 226.7
Sample B Female 243.6
Sample C Male 236.6
Sample D Male 252.3
Ventral spinal cord
nTPM: 322.3
Samples: 4

Max nTPM: 372.6
Min nTPM: 282.3
Sample A Female 312.2
Sample B Female 372.6
Sample C Male 322.0
Sample D Male 282.3

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