A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
669.9
nTPM
Monaco:
245.8
nTPM
Schmiedel:
274.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
669.9
HPA sample
nTPM
NK-cell nTPM: 669.9
Samples: 6
Max nTPM: 914.2
Min nTPM: 548.6
P10809_1013
567.1
P10809_1033
681.1
P10809_1052
572.5
P10809_1071
914.2
P10809_1093
548.6
P10809_1103
735.7
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
245.8
Monaco sample
nTPM
NK-cell nTPM: 245.8
Samples: 4
Max nTPM: 361.8
Min nTPM: 173.2
RHH5316_R3683
361.8
RHH5224_R3596
196.8
RHH5253_R3625
173.2
RHH5282_R3654
251.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
274.9
Schmiedel sample id
TPM
NK-cell TPM: 274.9
Samples: 90
Max TPM: 539.5
Min TPM: 131.7
NK_1
539.5
NK_2
428.0
NK_3
394.4
NK_4
373.8
NK_5
364.6
NK_6
356.3
NK_7
353.8
NK_8
350.4
NK_9
348.9
NK_10
348.9
NK_11
344.3
NK_12
339.6
NK_13
338.7
NK_14
337.0
NK_15
334.0
NK_16
333.6
NK_17
333.4
NK_18
332.5
NK_19
327.6
NK_20
321.6
NK_21
321.1
NK_22
317.6
NK_23
316.4
NK_24
315.3
NK_25
314.2
NK_26
312.5
NK_27
311.0
NK_28
306.7
NK_29
306.3
NK_30
301.9
NK_31
301.6
NK_32
301.0
NK_33
299.8
NK_34
296.7
NK_35
296.5
NK_36
294.5
NK_37
288.5
NK_38
288.3
NK_39
287.4
NK_40
286.3
NK_41
283.9
NK_42
280.7
NK_43
279.8
NK_44
277.6
NK_45
276.5
NK_46
276.3
NK_47
271.7
NK_48
270.8
NK_49
270.6
NK_50
270.3
NK_51
264.7
NK_52
263.0
NK_53
262.8
NK_54
261.8
NK_55
261.0
NK_56
256.5
NK_57
255.2
NK_58
255.0
NK_59
252.4
NK_60
248.5
NK_61
245.4
NK_62
244.8
NK_63
243.7
NK_64
239.6
NK_65
239.3
NK_66
237.9
NK_67
234.0
NK_68
228.2
NK_69
228.1
NK_70
225.6
NK_71
220.6
NK_72
219.4
NK_73
216.0
NK_74
215.5
NK_75
211.5
NK_76
210.6
NK_77
203.1
NK_78
201.9
NK_79
191.3
NK_80
189.7
NK_81
189.6
NK_82
182.4
NK_83
180.7
NK_84
176.1
NK_85
174.7
NK_86
167.4
NK_87
165.7
NK_88
164.9
NK_89
161.0
NK_90
131.7
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