A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
546.7
nTPM
Monaco:
566.7
nTPM
Schmiedel:
355.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
546.7
HPA sample
nTPM
Classical monocyte nTPM: 440.0
Samples: 6
Max nTPM: 686.6
Min nTPM: 259.9
P10809_1003
327.4
P10809_1020
449.7
P10809_1039
686.6
P10809_1058
389.9
P10809_1080
259.9
P10809_1107
526.4
Intermediate monocyte nTPM: 546.7
Samples: 6
Max nTPM: 824.3
Min nTPM: 299.6
P10809_1004
675.9
P10809_1023
659.4
P10809_1042
491.9
P10809_1061
328.9
P10809_1081
299.6
P10809_1108
824.3
Non-classical monocyte nTPM: 451.9
Samples: 5
Max nTPM: 659.0
Min nTPM: 310.2
P10809_1005
659.0
P10809_1053
310.2
P10809_1072
337.2
P10809_1082
337.1
P10809_1109
615.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
566.7
Monaco sample
nTPM
Classical monocyte nTPM: 459.0
Samples: 4
Max nTPM: 562.5
Min nTPM: 281.6
RHH5313_R3680
478.1
RHH5221_R3593
281.6
RHH5250_R3622
562.5
RHH5279_R3651
513.8
Intermediate monocyte nTPM: 566.7
Samples: 4
Max nTPM: 758.7
Min nTPM: 440.3
RHH5314_R3681
758.7
RHH5222_R3594
440.3
RHH5251_R3623
526.5
RHH5280_R3652
541.1
Non-classical monocyte nTPM: 373.4
Samples: 4
Max nTPM: 514.9
Min nTPM: 242.5
RHH5315_R3682
514.9
RHH5223_R3595
242.5
RHH5252_R3624
339.6
RHH5281_R3653
396.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
355.3
Schmiedel sample id
TPM
Classical monocyte TPM: 355.3
Samples: 91
Max TPM: 539.9
Min TPM: 236.4
MONOCYTES_1
539.9
MONOCYTES_2
445.2
MONOCYTES_3
442.9
MONOCYTES_4
437.6
MONOCYTES_5
436.8
MONOCYTES_6
435.3
MONOCYTES_7
424.3
MONOCYTES_8
418.8
MONOCYTES_9
418.2
MONOCYTES_10
417.8
MONOCYTES_11
417.0
MONOCYTES_12
414.3
MONOCYTES_13
413.8
MONOCYTES_14
413.1
MONOCYTES_15
411.7
MONOCYTES_16
407.7
MONOCYTES_17
406.2
MONOCYTES_18
403.3
MONOCYTES_19
396.4
MONOCYTES_20
395.2
MONOCYTES_21
387.7
MONOCYTES_22
385.2
MONOCYTES_23
384.9
MONOCYTES_24
384.2
MONOCYTES_25
384.1
MONOCYTES_26
382.6
MONOCYTES_27
381.3
MONOCYTES_28
380.6
MONOCYTES_29
380.6
MONOCYTES_30
380.2
MONOCYTES_31
379.9
MONOCYTES_32
379.4
MONOCYTES_33
378.0
MONOCYTES_34
374.1
MONOCYTES_35
373.3
MONOCYTES_36
372.9
MONOCYTES_37
372.9
MONOCYTES_38
372.3
MONOCYTES_39
371.7
MONOCYTES_40
367.4
MONOCYTES_41
365.2
MONOCYTES_42
363.7
MONOCYTES_43
363.2
MONOCYTES_44
363.0
MONOCYTES_45
362.3
MONOCYTES_46
362.3
MONOCYTES_47
356.0
MONOCYTES_48
354.8
MONOCYTES_49
353.9
MONOCYTES_50
353.2
MONOCYTES_51
351.8
MONOCYTES_52
350.8
MONOCYTES_53
349.8
MONOCYTES_54
344.9
MONOCYTES_55
344.5
MONOCYTES_56
344.1
MONOCYTES_57
342.9
MONOCYTES_58
341.7
MONOCYTES_59
341.5
MONOCYTES_60
340.8
MONOCYTES_61
340.3
MONOCYTES_62
338.4
MONOCYTES_63
336.1
MONOCYTES_64
332.1
MONOCYTES_65
329.7
MONOCYTES_66
328.3
MONOCYTES_67
328.1
MONOCYTES_68
327.9
MONOCYTES_69
322.5
MONOCYTES_70
321.1
MONOCYTES_71
320.1
MONOCYTES_72
317.5
MONOCYTES_73
316.5
MONOCYTES_74
306.0
MONOCYTES_75
304.5
MONOCYTES_76
304.0
MONOCYTES_77
301.5
MONOCYTES_78
298.7
MONOCYTES_79
297.2
MONOCYTES_80
286.5
MONOCYTES_81
285.3
MONOCYTES_82
276.8
MONOCYTES_83
267.2
MONOCYTES_84
264.6
MONOCYTES_85
263.9
MONOCYTES_86
260.1
MONOCYTES_87
258.5
MONOCYTES_88
248.7
MONOCYTES_89
248.4
MONOCYTES_90
247.7
MONOCYTES_91
236.4
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Non-classical monocyte TPM: 283.9
Samples: 90
Max TPM: 462.2
Min TPM: 121.0
M2_1
462.2
M2_2
410.9
M2_3
393.0
M2_4
380.4
M2_5
363.6
M2_6
358.6
M2_7
355.7
M2_8
353.9
M2_9
351.4
M2_10
351.3
M2_11
349.5
M2_12
344.1
M2_13
343.8
M2_14
342.2
M2_15
341.6
M2_16
341.0
M2_17
337.7
M2_18
336.4
M2_19
335.5
M2_20
335.1
M2_21
334.9
M2_22
332.0
M2_23
329.9
M2_24
328.9
M2_25
328.8
M2_26
328.7
M2_27
326.6
M2_28
323.3
M2_29
320.2
M2_30
315.0
M2_31
314.5
M2_32
314.0
M2_33
311.9
M2_34
308.9
M2_35
307.0
M2_36
305.4
M2_37
304.8
M2_38
303.4
M2_39
301.8
M2_40
300.6
M2_41
299.6
M2_42
298.3
M2_43
297.4
M2_44
297.1
M2_45
294.3
M2_46
292.7
M2_47
290.6
M2_48
288.6
M2_49
288.3
M2_50
288.0
M2_51
282.6
M2_52
282.1
M2_53
278.5
M2_54
275.2
M2_55
274.4
M2_56
273.5
M2_57
271.4
M2_58
266.7
M2_59
260.1
M2_60
257.5
M2_61
252.8
M2_62
251.8
M2_63
250.7
M2_64
250.5
M2_65
249.0
M2_66
248.4
M2_67
247.4
M2_68
246.3
M2_69
245.8
M2_70
242.0
M2_71
237.6
M2_72
235.7
M2_73
235.1
M2_74
228.5
M2_75
225.8
M2_76
221.3
M2_77
215.8
M2_78
212.6
M2_79
209.9
M2_80
202.8
M2_81
196.8
M2_82
191.7
M2_83
182.8
M2_84
172.5
M2_85
172.3
M2_86
165.0
M2_87
161.4
M2_88
149.3
M2_89
140.5
M2_90
121.0
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