MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:51.7 nTPM
HPA Brain:254.0 nTPM
GTEx:51.7 nTPM
FANTOM5:168.9 Scaled Tags Per Million
Pig:94.7 nTPM
Mouse:14.6 nTPM
Allen mouse:0.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 254.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 108.2
2828 Female, age 72, unknown 228.4
1827 Male, age 72, unknown 128.9
1833 Male, age 53, unknown 121.5
2411 Female, age 72, unknown 115.0
1870 Female, age 42, unknown 113.3
1830 Male, age 51, unknown 105.9
2586 Male, age 75, left hemisphere 95.7
2666 Male, age 74, left hemisphere 68.1
2019 Male, age 18, unknown 55.7
2219 Male, age 76, both hemispheres 49.7
Dorsal raphe nucleus
nTPM: 156.0
2016 Female, age 72, unknown 225.6
1828 Male, age 53, unknown 175.1
2298 Female, age 72, unknown 150.4
2047 Male, age 72, unknown 132.6
2750 Male, age 76, both hemispheres 96.6
Inferior colliculus
nTPM: 121.2
2849 Male, age 72, unknown 160.2
1848 Female, age 42, unknown 136.5
2097 Female, age 72, unknown 100.3
1890 Male, age 53, unknown 87.9
Median raphe nucleus
nTPM: 89.6
2220 Male, age 76, midline 89.6
Periaquaductal grey, anterior
nTPM: 143.8
1947 Male, age 18, unknown 158.4
1795 Male, age 51, unknown 151.2
2502 Female, age 75, unknown 121.7
Periaquaductal grey, dorsal
nTPM: 191.6
2850 Male, age 76, both hemispheres 233.1
1840 Male, age 53, unknown 182.5
1831 Male, age 72, unknown 175.5
2464 Female, age 72, unknown 175.4
Periaquaductal grey, lateral
nTPM: 254.0
2053 Male, age 18, unknown 327.1
2140 Male, age 76, both hemispheres 278.1
2272 Male, age 74, both hemispheres 156.7
Pretectal area
nTPM: 173.5
2667 Female, age 75, unknown 274.6
2273 Male, age 74, both hemispheres 257.2
2825 Male, age 18, unknown 213.0
1944 Female, age 72, unknown 202.8
2316 Male, age 76, right hemisphere 180.1
2224 Female, age 72, unknown 154.7
1816 Male, age 51, unknown 148.9
2407 Male, age 75, both hemispheres 147.2
1815 Male, age 53, unknown 137.1
1817 Female, age 42, unknown 121.1
2007 Male, age 72, unknown 71.9
Red nucleus
nTPM: 104.7
2725 Female, age 75, unknown 139.0
1865 Male, age 51, unknown 119.1
1954 Female, age 42, unknown 117.1
2769 Male, age 72, unknown 116.2
2823 Male, age 76, right hemisphere 116.2
2503 Female, age 72, unknown 113.7
2227 Male, age 72, unknown 112.7
2588 Male, age 74, left hemisphere 106.1
1821 Female, age 72, unknown 105.5
1904 Male, age 53, unknown 104.2
2584 Male, age 75, left hemisphere 54.8
2785 Male, age 18, unknown 51.9
Substantia nigra
nTPM: 107.5
2699 Male, age 18, unknown 150.5
2409 Female, age 72, unknown 133.3
1916 Female, age 42, unknown 124.5
1889 Female, age 72, unknown 117.4
2590 Female, age 75, unknown 99.1
2241 Male, age 72, unknown 95.4
1851 Male, age 51, unknown 95.1
2583 Male, age 75, right hemisphere 92.2
2665 Male, age 74, both hemispheres 87.6
1941 Male, age 53, unknown 79.9
Superior colliculus
nTPM: 145.4
2087 Female, age 72, unknown 213.4
1995 Male, age 72, unknown 189.2
2261 Male, age 18, unknown 171.7
1913 Female, age 42, unknown 158.8
2664 Male, age 75, both hemispheres 154.2
1796 Male, age 53, unknown 143.4
1839 Male, age 51, unknown 126.5
2587 Male, age 74, left hemisphere 122.5
1895 Male, age 76, right hemisphere 99.0
2668 Female, age 75, unknown 75.3
Ventral tegmental area
nTPM: 117.7
2021 Male, age 53, unknown 166.5
2410 Female, age 72, unknown 123.0
2218 Male, age 76, both hemispheres 122.3
1942 Male, age 51, unknown 115.6
1915 Female, age 42, unknown 96.3
2223 Female, age 72, unknown 82.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 51.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 51.7
Samples: 183

Max nTPM: 345.3
Min nTPM: 1.9
Std nTPM: 56.5
Median nTPM: 33.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 345.3
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 307.9
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 282.3
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 228.5
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 221.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 215.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 214.4
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 202.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 200.7
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 182.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 162.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 168.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 168.9
FF:10158-103A5 76 years, female 168.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 94.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 94.7
Samples: 4

Max nTPM: 116.9
Min nTPM: 77.5
Sample A Female 77.5
Sample B Female 87.6
Sample C Male 96.7
Sample D Male 116.9
Midbrain
nTPM: 63.3
Samples: 4

Max nTPM: 90.7
Min nTPM: 38.3
Sample A Female 38.3
Sample B Female 90.7
Sample C Male 66.0
Sample D Male 58.2
Periaqueductal gray
nTPM: 86.6
Samples: 3

Max nTPM: 100.7
Min nTPM: 69.7
Sample B Female 100.7
Sample C Male 89.3
Sample D Male 69.7
Superior colliculi
nTPM: 48.0
Samples: 4

Max nTPM: 62.8
Min nTPM: 16.2
Sample A Female 59.8
Sample B Female 16.2
Sample C Male 53.3
Sample D Male 62.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 14.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.6
Samples: 4

Max nTPM: 15.9
Min nTPM: 13.6
Sample A Male 15.9
Sample B Male 13.6
Sample C Female 14.1
Sample D Female 14.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
76003324 Antisense, RP_060608_02_B03, Mouse strain C57BL/6J (56 days, male) 0.9

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