MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.3 nTPM
HPA Brain:87.1 nTPM
GTEx:12.3 nTPM
FANTOM5:50.9 Scaled Tags Per Million
Pig:63.2 nTPM
Mouse:22.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 87.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 75.6
2586 Male, age 75, left hemisphere 102.6
2666 Male, age 74, left hemisphere 91.6
2828 Female, age 72, unknown 79.5
1833 Male, age 53, unknown 76.0
1830 Male, age 51, unknown 73.6
2219 Male, age 76, both hemispheres 72.2
1827 Male, age 72, unknown 69.9
2019 Male, age 18, unknown 66.3
1870 Female, age 42, unknown 66.0
2411 Female, age 72, unknown 58.7
Dorsal raphe nucleus
nTPM: 62.2
2047 Male, age 72, unknown 68.6
1828 Male, age 53, unknown 66.7
2750 Male, age 76, both hemispheres 65.6
2016 Female, age 72, unknown 56.4
2298 Female, age 72, unknown 53.5
Inferior colliculus
nTPM: 70.8
2849 Male, age 72, unknown 98.7
1890 Male, age 53, unknown 66.2
1848 Female, age 42, unknown 65.4
2097 Female, age 72, unknown 52.8
Median raphe nucleus
nTPM: 87.1
2220 Male, age 76, midline 87.1
Periaquaductal grey, anterior
nTPM: 68.9
1795 Male, age 51, unknown 72.6
1947 Male, age 18, unknown 67.8
2502 Female, age 75, unknown 66.3
Periaquaductal grey, dorsal
nTPM: 74.6
2850 Male, age 76, both hemispheres 95.4
1831 Male, age 72, unknown 71.3
1840 Male, age 53, unknown 67.2
2464 Female, age 72, unknown 64.5
Periaquaductal grey, lateral
nTPM: 69.7
2140 Male, age 76, both hemispheres 84.6
2272 Male, age 74, both hemispheres 62.5
2053 Male, age 18, unknown 62.0
Pretectal area
nTPM: 73.2
2407 Male, age 75, both hemispheres 87.1
1817 Female, age 42, unknown 78.5
1816 Male, age 51, unknown 78.2
1815 Male, age 53, unknown 75.3
1944 Female, age 72, unknown 75.0
2667 Female, age 75, unknown 74.6
2007 Male, age 72, unknown 74.0
2825 Male, age 18, unknown 73.4
2316 Male, age 76, right hemisphere 72.8
2224 Female, age 72, unknown 63.7
2273 Male, age 74, both hemispheres 52.6
Red nucleus
nTPM: 69.4
2584 Male, age 75, left hemisphere 90.5
2823 Male, age 76, right hemisphere 77.8
2588 Male, age 74, left hemisphere 73.3
2785 Male, age 18, unknown 69.6
2725 Female, age 75, unknown 68.7
2769 Male, age 72, unknown 68.5
1904 Male, age 53, unknown 66.9
1865 Male, age 51, unknown 65.8
2227 Male, age 72, unknown 65.7
2503 Female, age 72, unknown 64.4
1954 Female, age 42, unknown 63.5
1821 Female, age 72, unknown 57.7
Substantia nigra
nTPM: 77.8
2665 Male, age 74, both hemispheres 97.8
2699 Male, age 18, unknown 96.4
1916 Female, age 42, unknown 88.5
1941 Male, age 53, unknown 81.3
2583 Male, age 75, right hemisphere 77.8
1851 Male, age 51, unknown 71.9
2590 Female, age 75, unknown 69.7
1889 Female, age 72, unknown 67.6
2409 Female, age 72, unknown 64.1
2241 Male, age 72, unknown 63.2
Superior colliculus
nTPM: 71.9
2664 Male, age 75, both hemispheres 90.9
2668 Female, age 75, unknown 80.2
1796 Male, age 53, unknown 72.1
2087 Female, age 72, unknown 71.8
2261 Male, age 18, unknown 71.1
1839 Male, age 51, unknown 69.9
2587 Male, age 74, left hemisphere 67.2
1913 Female, age 42, unknown 66.8
1895 Male, age 76, right hemisphere 65.9
1995 Male, age 72, unknown 62.8
Ventral tegmental area
nTPM: 70.8
2218 Male, age 76, both hemispheres 80.6
1942 Male, age 51, unknown 72.5
1915 Female, age 42, unknown 70.7
2223 Female, age 72, unknown 69.6
2021 Male, age 53, unknown 68.6
2410 Female, age 72, unknown 62.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 12.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.3
Samples: 183

Max nTPM: 24.3
Min nTPM: 7.4
Std nTPM: 2.5
Median nTPM: 12.0
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 24.3
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 21.4
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 19.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 18.9
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 18.9
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 18.1
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 17.9
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 17.7
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 17.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 17.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 17.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 50.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 50.9
FF:10158-103A5 76 years, female 50.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 63.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 62.6
Samples: 4

Max nTPM: 67.4
Min nTPM: 59.0
Sample A Female 62.7
Sample B Female 59.0
Sample C Male 67.4
Sample D Male 61.2
Midbrain
nTPM: 63.2
Samples: 4

Max nTPM: 70.6
Min nTPM: 56.4
Sample A Female 68.2
Sample B Female 56.4
Sample C Male 70.6
Sample D Male 57.7
Periaqueductal gray
nTPM: 54.2
Samples: 3

Max nTPM: 57.8
Min nTPM: 51.7
Sample B Female 53.2
Sample C Male 57.8
Sample D Male 51.7
Superior colliculi
nTPM: 60.7
Samples: 4

Max nTPM: 67.7
Min nTPM: 48.0
Sample A Female 64.5
Sample B Female 48.0
Sample C Male 62.7
Sample D Male 67.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 22.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.8
Samples: 4

Max nTPM: 26.5
Min nTPM: 20.9
Sample A Male 20.9
Sample B Male 22.7
Sample C Female 26.5
Sample D Female 20.9

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