A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.4
nTPM
Monaco:
73.6
nTPM
Schmiedel:
55.7
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.4
HPA sample
nTPM
NK-cell nTPM: 6.4
Samples: 6
Max nTPM: 15.7
Min nTPM: 0.6
P10809_1013
5.5
P10809_1033
4.3
P10809_1052
15.7
P10809_1071
0.6
P10809_1093
2.5
P10809_1103
9.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
73.6
Monaco sample
nTPM
NK-cell nTPM: 73.6
Samples: 4
Max nTPM: 84.6
Min nTPM: 63.1
RHH5316_R3683
63.1
RHH5224_R3596
82.5
RHH5253_R3625
84.6
RHH5282_R3654
64.2
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
55.7
Schmiedel sample id
TPM
NK-cell TPM: 55.7
Samples: 90
Max TPM: 87.1
Min TPM: 22.1
NK_1
87.1
NK_2
82.5
NK_3
82.4
NK_4
80.9
NK_5
79.8
NK_6
79.8
NK_7
78.5
NK_8
78.2
NK_9
77.2
NK_10
77.1
NK_11
77.0
NK_12
76.9
NK_13
76.4
NK_14
74.8
NK_15
74.4
NK_16
73.7
NK_17
73.2
NK_18
72.3
NK_19
72.0
NK_20
71.3
NK_21
70.7
NK_22
70.2
NK_23
69.7
NK_24
69.3
NK_25
68.7
NK_26
68.0
NK_27
66.1
NK_28
65.9
NK_29
64.7
NK_30
64.0
NK_31
63.0
NK_32
62.9
NK_33
62.4
NK_34
62.4
NK_35
61.1
NK_36
61.0
NK_37
60.9
NK_38
60.7
NK_39
59.8
NK_40
58.5
NK_41
57.8
NK_42
57.3
NK_43
56.9
NK_44
56.9
NK_45
56.1
NK_46
56.0
NK_47
55.7
NK_48
55.2
NK_49
55.0
NK_50
54.5
NK_51
54.0
NK_52
53.9
NK_53
53.8
NK_54
53.4
NK_55
53.4
NK_56
51.7
NK_57
50.2
NK_58
49.6
NK_59
49.5
NK_60
49.2
NK_61
49.1
NK_62
48.8
NK_63
48.7
NK_64
47.7
NK_65
46.6
NK_66
45.1
NK_67
44.2
NK_68
43.9
NK_69
43.0
NK_70
41.4
NK_71
41.4
NK_72
41.3
NK_73
37.9
NK_74
37.2
NK_75
36.0
NK_76
35.4
NK_77
35.4
NK_78
34.9
NK_79
34.3
NK_80
33.7
NK_81
31.6
NK_82
31.5
NK_83
31.0
NK_84
28.9
NK_85
28.6
NK_86
27.8
NK_87
27.5
NK_88
24.5
NK_89
22.4
NK_90
22.1
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
