A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.1
nTPM
Monaco:
48.3
nTPM
Schmiedel:
24.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.1
HPA sample
nTPM
Classical monocyte nTPM: 4.3
Samples: 6
Max nTPM: 6.9
Min nTPM: 2.6
P10809_1003
6.9
P10809_1020
3.6
P10809_1039
2.6
P10809_1058
3.9
P10809_1080
4.1
P10809_1107
4.7
Intermediate monocyte nTPM: 5.1
Samples: 6
Max nTPM: 9.4
Min nTPM: 1.2
P10809_1004
8.0
P10809_1023
3.3
P10809_1042
1.2
P10809_1061
9.4
P10809_1081
2.6
P10809_1108
6.0
Non-classical monocyte nTPM: 4.1
Samples: 5
Max nTPM: 6.5
Min nTPM: 0.0
P10809_1005
6.5
P10809_1053
5.3
P10809_1072
0.0
P10809_1082
2.6
P10809_1109
6.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
48.3
Monaco sample
nTPM
Classical monocyte nTPM: 39.9
Samples: 4
Max nTPM: 52.2
Min nTPM: 30.8
RHH5313_R3680
42.5
RHH5221_R3593
34.1
RHH5250_R3622
52.2
RHH5279_R3651
30.8
Intermediate monocyte nTPM: 36.1
Samples: 4
Max nTPM: 47.0
Min nTPM: 28.2
RHH5314_R3681
33.4
RHH5222_R3594
47.0
RHH5251_R3623
28.2
RHH5280_R3652
35.7
Non-classical monocyte nTPM: 48.3
Samples: 4
Max nTPM: 55.9
Min nTPM: 36.0
RHH5315_R3682
49.3
RHH5223_R3595
51.9
RHH5252_R3624
55.9
RHH5281_R3653
36.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.2
Schmiedel sample id
TPM
Classical monocyte TPM: 20.1
Samples: 91
Max TPM: 27.5
Min TPM: 11.1
MONOCYTES_1
27.5
MONOCYTES_2
27.5
MONOCYTES_3
27.1
MONOCYTES_4
26.9
MONOCYTES_5
26.7
MONOCYTES_6
26.6
MONOCYTES_7
26.4
MONOCYTES_8
25.9
MONOCYTES_9
25.8
MONOCYTES_10
25.7
MONOCYTES_11
25.7
MONOCYTES_12
25.5
MONOCYTES_13
25.2
MONOCYTES_14
25.0
MONOCYTES_15
25.0
MONOCYTES_16
24.8
MONOCYTES_17
24.5
MONOCYTES_18
24.5
MONOCYTES_19
24.4
MONOCYTES_20
24.4
MONOCYTES_21
24.3
MONOCYTES_22
23.8
MONOCYTES_23
23.6
MONOCYTES_24
23.5
MONOCYTES_25
23.5
MONOCYTES_26
23.2
MONOCYTES_27
23.2
MONOCYTES_28
22.9
MONOCYTES_29
22.8
MONOCYTES_30
22.7
MONOCYTES_31
22.6
MONOCYTES_32
22.5
MONOCYTES_33
22.5
MONOCYTES_34
22.3
MONOCYTES_35
22.2
MONOCYTES_36
21.8
MONOCYTES_37
21.7
MONOCYTES_38
21.4
MONOCYTES_39
21.3
MONOCYTES_40
21.2
MONOCYTES_41
20.9
MONOCYTES_42
20.9
MONOCYTES_43
20.7
MONOCYTES_44
20.6
MONOCYTES_45
20.4
MONOCYTES_46
20.1
MONOCYTES_47
19.7
MONOCYTES_48
19.6
MONOCYTES_49
19.2
MONOCYTES_50
19.1
MONOCYTES_51
19.0
MONOCYTES_52
18.8
MONOCYTES_53
18.8
MONOCYTES_54
18.6
MONOCYTES_55
18.2
MONOCYTES_56
18.1
MONOCYTES_57
18.1
MONOCYTES_58
18.0
MONOCYTES_59
17.9
MONOCYTES_60
17.9
MONOCYTES_61
17.9
MONOCYTES_62
17.8
MONOCYTES_63
17.7
MONOCYTES_64
17.6
MONOCYTES_65
17.5
MONOCYTES_66
17.5
MONOCYTES_67
17.5
MONOCYTES_68
17.4
MONOCYTES_69
17.4
MONOCYTES_70
17.2
MONOCYTES_71
17.2
MONOCYTES_72
16.7
MONOCYTES_73
16.3
MONOCYTES_74
16.0
MONOCYTES_75
15.8
MONOCYTES_76
15.7
MONOCYTES_77
15.7
MONOCYTES_78
15.3
MONOCYTES_79
15.0
MONOCYTES_80
14.7
MONOCYTES_81
14.1
MONOCYTES_82
13.8
MONOCYTES_83
13.5
MONOCYTES_84
13.2
MONOCYTES_85
13.0
MONOCYTES_86
12.7
MONOCYTES_87
12.7
MONOCYTES_88
11.9
MONOCYTES_89
11.3
MONOCYTES_90
11.2
MONOCYTES_91
11.1
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Non-classical monocyte TPM: 24.2
Samples: 90
Max TPM: 40.6
Min TPM: 8.5
M2_1
40.6
M2_2
38.3
M2_3
37.9
M2_4
36.3
M2_5
34.1
M2_6
33.9
M2_7
33.6
M2_8
33.2
M2_9
32.1
M2_10
32.0
M2_11
31.9
M2_12
31.3
M2_13
31.1
M2_14
31.0
M2_15
30.9
M2_16
30.7
M2_17
30.2
M2_18
30.1
M2_19
29.9
M2_20
29.3
M2_21
29.1
M2_22
29.0
M2_23
28.9
M2_24
28.9
M2_25
28.8
M2_26
28.7
M2_27
28.5
M2_28
28.3
M2_29
28.1
M2_30
28.1
M2_31
28.0
M2_32
28.0
M2_33
27.9
M2_34
27.9
M2_35
27.7
M2_36
27.6
M2_37
27.6
M2_38
27.4
M2_39
27.3
M2_40
27.3
M2_41
27.1
M2_42
26.9
M2_43
26.8
M2_44
26.5
M2_45
26.0
M2_46
25.6
M2_47
25.4
M2_48
24.7
M2_49
24.5
M2_50
24.2
M2_51
23.0
M2_52
23.0
M2_53
22.8
M2_54
22.8
M2_55
22.6
M2_56
22.4
M2_57
21.6
M2_58
21.5
M2_59
21.2
M2_60
21.0
M2_61
20.8
M2_62
20.6
M2_63
20.5
M2_64
20.5
M2_65
19.8
M2_66
19.6
M2_67
18.8
M2_68
18.4
M2_69
18.0
M2_70
16.7
M2_71
16.7
M2_72
16.3
M2_73
16.3
M2_74
16.0
M2_75
16.0
M2_76
15.6
M2_77
15.5
M2_78
15.4
M2_79
15.2
M2_80
15.1
M2_81
14.8
M2_82
14.5
M2_83
14.5
M2_84
14.5
M2_85
14.3
M2_86
13.8
M2_87
13.0
M2_88
10.4
M2_89
8.8
M2_90
8.5
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