MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.8 nTPM
HPA Brain:31.1 nTPM
GTEx:12.8 nTPM
FANTOM5:71.8 Scaled Tags Per Million
Pig:42.7 nTPM
Mouse:17.0 nTPM
Allen mouse:18.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 31.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.3
2019 Male, age 18, unknown 35.8
2586 Male, age 75, left hemisphere 32.6
2411 Female, age 72, unknown 31.3
1870 Female, age 42, unknown 30.6
2666 Male, age 74, left hemisphere 30.4
1827 Male, age 72, unknown 30.2
1830 Male, age 51, unknown 28.8
1833 Male, age 53, unknown 28.2
2828 Female, age 72, unknown 28.2
2219 Male, age 76, both hemispheres 26.9
Dorsal raphe nucleus
nTPM: 28.9
2047 Male, age 72, unknown 30.0
2750 Male, age 76, both hemispheres 29.7
2298 Female, age 72, unknown 28.5
1828 Male, age 53, unknown 28.2
2016 Female, age 72, unknown 28.1
Inferior colliculus
nTPM: 28.7
2097 Female, age 72, unknown 31.1
1848 Female, age 42, unknown 30.2
1890 Male, age 53, unknown 30.2
2849 Male, age 72, unknown 23.3
Median raphe nucleus
nTPM: 30.6
2220 Male, age 76, midline 30.6
Periaquaductal grey, anterior
nTPM: 29.1
2502 Female, age 75, unknown 32.4
1947 Male, age 18, unknown 27.6
1795 Male, age 51, unknown 27.3
Periaquaductal grey, dorsal
nTPM: 26.1
1840 Male, age 53, unknown 27.6
2464 Female, age 72, unknown 26.8
1831 Male, age 72, unknown 25.0
2850 Male, age 76, both hemispheres 24.9
Periaquaductal grey, lateral
nTPM: 25.5
2053 Male, age 18, unknown 27.6
2140 Male, age 76, both hemispheres 26.1
2272 Male, age 74, both hemispheres 22.7
Pretectal area
nTPM: 30.1
1817 Female, age 42, unknown 36.2
1816 Male, age 51, unknown 36.0
2007 Male, age 72, unknown 35.1
1944 Female, age 72, unknown 34.2
1815 Male, age 53, unknown 33.0
2316 Male, age 76, right hemisphere 29.2
2407 Male, age 75, both hemispheres 26.8
2825 Male, age 18, unknown 25.8
2667 Female, age 75, unknown 25.6
2224 Female, age 72, unknown 25.2
2273 Male, age 74, both hemispheres 23.5
Red nucleus
nTPM: 31.1
1821 Female, age 72, unknown 36.2
1954 Female, age 42, unknown 35.1
1865 Male, age 51, unknown 32.4
1904 Male, age 53, unknown 32.3
2785 Male, age 18, unknown 32.1
2588 Male, age 74, left hemisphere 31.1
2227 Male, age 72, unknown 30.8
2503 Female, age 72, unknown 29.9
2769 Male, age 72, unknown 29.4
2823 Male, age 76, right hemisphere 28.4
2725 Female, age 75, unknown 28.0
2584 Male, age 75, left hemisphere 27.8
Substantia nigra
nTPM: 30.7
1889 Female, age 72, unknown 34.8
2241 Male, age 72, unknown 34.0
1916 Female, age 42, unknown 32.0
2409 Female, age 72, unknown 31.2
2583 Male, age 75, right hemisphere 30.6
2590 Female, age 75, unknown 29.8
1851 Male, age 51, unknown 29.6
2665 Male, age 74, both hemispheres 29.5
1941 Male, age 53, unknown 29.0
2699 Male, age 18, unknown 26.6
Superior colliculus
nTPM: 29.7
2668 Female, age 75, unknown 34.9
2087 Female, age 72, unknown 31.6
2261 Male, age 18, unknown 31.0
2664 Male, age 75, both hemispheres 30.3
1995 Male, age 72, unknown 29.4
2587 Male, age 74, left hemisphere 29.2
1796 Male, age 53, unknown 28.2
1839 Male, age 51, unknown 28.1
1913 Female, age 42, unknown 27.7
1895 Male, age 76, right hemisphere 26.8
Ventral tegmental area
nTPM: 29.7
2410 Female, age 72, unknown 32.8
2223 Female, age 72, unknown 31.1
1915 Female, age 42, unknown 29.1
2218 Male, age 76, both hemispheres 28.9
1942 Male, age 51, unknown 28.4
2021 Male, age 53, unknown 27.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 12.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.8
Samples: 183

Max nTPM: 28.3
Min nTPM: 8.3
Std nTPM: 2.9
Median nTPM: 12.1
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 28.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 24.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 22.9
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 22.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 20.3
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 19.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 19.6
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 18.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 17.7
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 17.5
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 17.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 71.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 71.8
FF:10158-103A5 76 years, female 71.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 42.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 34.1
Samples: 4

Max nTPM: 39.0
Min nTPM: 29.2
Sample A Female 39.0
Sample B Female 35.3
Sample C Male 32.9
Sample D Male 29.2
Midbrain
nTPM: 35.1
Samples: 4

Max nTPM: 47.4
Min nTPM: 27.6
Sample A Female 30.7
Sample B Female 27.6
Sample C Male 47.4
Sample D Male 34.7
Periaqueductal gray
nTPM: 27.9
Samples: 3

Max nTPM: 30.5
Min nTPM: 24.8
Sample B Female 24.8
Sample C Male 30.5
Sample D Male 28.5
Superior colliculi
nTPM: 42.7
Samples: 4

Max nTPM: 53.9
Min nTPM: 37.8
Sample A Female 40.2
Sample B Female 53.9
Sample C Male 38.8
Sample D Male 37.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 17.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.0
Samples: 4

Max nTPM: 18.1
Min nTPM: 16.3
Sample A Male 16.6
Sample B Male 18.1
Sample C Female 16.3
Sample D Female 16.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 18.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 18.6
588 Antisense, RP_Baylor_102855, Mouse strain C57BL/6J (56 days, male) 18.6
589 Antisense, RP_Baylor_102855, Mouse strain C57BL/6J (56 days, male) 15.0

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo