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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:396.2 nTPM
HPA Brain:679.7 nTPM
GTEx:396.2 nTPM
FANTOM5:701.3 Scaled Tags Per Million
Pig:375.4 nTPM
Mouse:898.9 nTPM
Allen mouse:22.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

679.7
Sample id Sample description nTPM
Amygdala
nTPM: 679.7
2814 Male, age 76, right hemisphere 836.2
2514 Male, age 75, right hemisphere 679.0
2695 Female, age 67, right hemisphere 640.5
2517 Female, age 94, left hemisphere 627.5
1987 Female, age 91, left hemisphere 615.3
Basal amygdala
nTPM: 632.6
2110 Male, age 80, left hemisphere 738.0
2243 Female, age 91, right hemisphere 707.8
1955 Male, age 76, both hemispheres 677.9
2685 Female, age 94, left hemisphere 624.8
2609 Male, age 75, right hemisphere 530.9
2827 Female, age 67, right hemisphere 515.8
Central amygdala
nTPM: 636.5
1905 Male, age 76, both hemispheres 768.1
2239 Male, age 80, left hemisphere 683.4
2826 Female, age 94, left hemisphere 657.1
2701 Female, age 91, right hemisphere 542.2
2515 Male, age 75, right hemisphere 531.7
Corticomedial amygdala
nTPM: 619.2
2242 Female, age 91, right hemisphere 717.7
2829 Male, age 80, left hemisphere 696.0
2240 Male, age 76, both hemispheres 666.0
2429 Female, age 94, left hemisphere 613.8
2428 Male, age 75, right hemisphere 517.0
2535 Female, age 67, right hemisphere 504.7
Lateral amygdala
nTPM: 624.9
1883 Male, age 76, both hemispheres 786.6
2534 Female, age 94, left hemisphere 695.5
2516 Male, age 75, right hemisphere 643.5
2830 Female, age 67, right hemisphere 618.9
2255 Female, age 91, right hemisphere 517.1
2256 Male, age 80, left hemisphere 487.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

396.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 396.2
Samples: 181

Max nTPM: 720.1
Min nTPM: 197.7
Std nTPM: 94.5
Median nTPM: 392.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 720.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 710.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 694.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 619.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 597.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 594.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 589.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 579.4
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 568.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 555.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 552.0
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 544.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 541.6
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 537.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 529.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 526.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 523.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 518.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 517.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 515.6
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 515.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 513.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 509.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 507.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 497.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 495.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 488.7
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 484.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 475.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 473.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 472.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 470.9
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 468.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 468.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 467.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 464.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 461.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 458.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 454.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 453.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 452.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 449.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 448.9
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 447.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 447.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 446.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 445.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 444.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 443.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 441.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 441.4
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 440.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 440.4
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 440.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 439.7
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 438.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 436.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 436.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 434.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 434.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 434.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 433.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 431.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 428.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 426.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 426.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 423.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 421.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 421.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 420.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 420.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 419.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 418.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 416.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 413.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 411.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 411.0
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 410.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 409.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 409.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 408.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 406.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 403.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 402.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 402.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 401.3
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 397.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 396.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 396.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 395.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 392.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 392.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 392.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 389.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 386.2
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 385.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 385.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 383.6
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 383.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 380.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 378.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 375.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 373.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 372.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 372.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 367.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 367.0
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 366.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 366.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 365.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 364.7
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 362.2
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 359.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 358.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 357.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 357.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 354.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 353.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 348.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 347.8
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 345.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 339.4
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 339.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 337.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 335.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 334.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 333.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 333.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 333.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 332.2
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 331.7
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 331.4
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 331.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 329.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 327.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 326.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 325.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 324.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 323.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 319.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 317.8
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 316.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 314.6
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 312.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 311.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 311.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 310.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 307.1
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 306.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 306.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 301.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 301.4
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 298.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 298.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 298.1
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 296.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 296.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 295.3
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 294.3
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 292.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 288.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 280.7
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 280.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 279.7
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 278.3
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 277.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 277.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 275.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 274.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 271.6
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 266.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 266.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 263.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 260.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 247.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 238.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 238.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 234.8
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 227.5
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 220.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 197.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

701.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 701.3
FF:10151-102I7 76 years, female 701.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

375.4
Pig sample Sample description nTPM
Amygdala
nTPM: 375.4
Samples: 4

Max nTPM: 504.5
Min nTPM: 308.9
Sample A Female 504.5
Sample B Female 308.9
Sample C Male 325.3
Sample D Male 362.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

898.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 898.9
Samples: 4

Max nTPM: 986.2
Min nTPM: 827.9
Sample A Male 986.2
Sample B Male 827.9
Sample C Female 895.1
Sample D Female 886.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

22.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 22.3
79591705 Antisense, RP_071218_02_B09, Mouse strain C57BL/6J (56 days, male) 37.0
106 Antisense, RP_Baylor_253875, Mouse strain C57BL/6J (56 days, male) 29.8
107 Antisense, RP_Baylor_253875, Mouse strain C57BL/6J (56 days, male) 25.8
70611467 Antisense, RP_050630_03_C12, Mouse strain C57BL/6J (56 days, male) 0.0

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